fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G03790 SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)

>AT1G03790.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 259, 825
HindIII A|AGCTT 61, 485
PstI CTGCA|G 776, 859


Click here to view TAIR data

>AT1G03790.1 length:1182
ATGGATGTCG TTTGTACGGA ACATCAAATG AGGAAGCCAA CGGTGGAGAT 
50
TCCTCCGAGA AAGCTTCTTT TATCTTCCAA GAGTTTTCCT TCTGATTCTT 
100
CTTCCCCTCG CTCGCCGCGT AAACATAACT GGAACAAAAG CAACAAGATT 
150
ACATCTGAAC ATGAAGAAGA CAACGAAGAC AACAACAGAG AGAATAAAGA 
200
GTACTGTTAT GATTCTGACT CTGATGATCC TTACGCAAGT GATCATTTCC 
250
GGATGTTCGA ATTCAAGATC CGTCGTTGCA CTCGTAGCCG AAGCCACGAT 
300
TGGACTGATT GTCCTTTTGC TCATCCCGGT GAGAAAGCTC GCCGTCGTGA 
350
CCCTCGTCGC TTTCAATACT CCGGTGAGGT TTGTCCCGAG TTTCGTCGTG 
400
GTGGTGATTG TAGCCGTGGA GATGATTGTG AGTTTGCTCA TGGAGTCTTC 
450
GAGTGTTGGC TCCATCCTAT TCGTTACCGT ACTGAAGCTT GTAAAGACGG 
500
TAAACACTGT AAAAGGAAAG TCTGTTTCTT TGCTCATTCG CCACGTCAGC 
550
TTAGGGTTCT TCCTCCGGAG AACGTTTCCG GTGTCTCAGC GTCGCCTTCT 
600
CCTGCGGCGA AGAATCCATG TTGCTTGTTT TGTAGCAGCT CTCCCACGAG 
650
CACTCTTTTG GGTAATTTGT CTCATCTTTC TCGATCTCCG TCTCTGTCTC 
700
CACCTATGTC TCCGGCTAAT AAAGCCGCTG CTTTTTCACG GTTGAGGAAC 
750
CGCGCCGCTT CTGCCGTTTC CGCCGCTGCA GCCGCTGGTT CAATGAACTA 
800
TAAAGACGTT TTGAGCGAGC TTGTGAATTC TTTGGATTCC ATGAGCTTAG 
850
CGGAAGCGCT GCAGGCGAGT TCCTCGTCGC CCGTTACAAC TCCGGTTTCC 
900
GCTGCGGCTG CCGCGTTTGC GTCGTCCTGC GGTCTGAGCA ATCAGCGTCT 
950
CCATCTCCAG CAACAACAAC CAAGTAGCCC TTTGCAATTT GCTCTTTCGC 
1000
CTTCCACTCC AAGTTACCTA ACTAACTCAC CTCAGGCGAA CTTCTTCAGT 
1050
GATGATTTCA CTCCTCGCCG GAGACAGATG AACGATTTCA CGGCGATGAC 
1100
GGCCGTTAGG GAGAATACTA ACATTGAGGA TGGTTCTTGT GGTGACCCTG 
1150
ATCTAGGATG GGTCAATGAT CTCTTGACTT GA
1200

>AT1G03790.1 longest ORF length:393
MDVVCTEHQM RKPTVEIPPR KLLLSSKSFP SDSSSPRSPR KHNWNKSNKI 
50
TSEHEEDNED NNRENKEYCY DSDSDDPYAS DHFRMFEFKI RRCTRSRSHD 
100
WTDCPFAHPG EKARRRDPRR FQYSGEVCPE FRRGGDCSRG DDCEFAHGVF 
150
ECWLHPIRYR TEACKDGKHC KRKVCFFAHS PRQLRVLPPE NVSGVSASPS 
200
PAAKNPCCLF CSSSPTSTLL GNLSHLSRSP SLSPPMSPAN KAAAFSRLRN 
250
RAASAVSAAA AAGSMNYKDV LSELVNSLDS MSLAEALQAS SSSPVTTPVS 
300
AAAAAFASSC GLSNQRLHLQ QQQPSSPLQF ALSPSTPSYL TNSPQANFFS 
350
DDFTPRRRQM NDFTAMTAVR ENTNIEDGSC GDPDLGWVND LLT
400