fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G04990 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)

>AT1G04990.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 665
NcoI C|CATGG 740, 746, 1022
NdeI CA|TATG 509, 575
PstI CTGCA|G 533
SacI GAGCT|C 36, 256
StyI C|C[AT][AT]GG 740, 746, 1022


Click here to view TAIR data

>AT1G04990.1 length:1215
ATGCGAACCC CCATGTCAGA CACTCAGCAT GTACAGAGCT CTTTGGTGTC 
50
GATTCGATCT TCCGACAAAA TCGAAGATGC CTTTAGGAAG ATGAAAGTAA 
100
ATGAGACCGG CGTGGAGGAA CTGAATCCGT ATCCAGATCG TCCCGGTGAA 
150
AGAGATTGCC AATTCTATTT AAGAACTGGT CTCTGTGGCT ATGGAAGCAG 
200
TTGCCGTTAC AATCATCCTA CTCATCTTCC ACAGGATGTT GCTTATTACA 
250
AGGAGGAGCT CCCTGAGAGA ATTGGACAGC CGGATTGTGA GTATTTTCTG 
300
AAGACAGGAG CTTGTAAGTA CGGCCCAACT TGTAAATATC ATCATCCAAA 
350
GGACAGGAAC GGTGCACAAC CTGTAATGTT CAATGTTATC GGTTTACCTA 
400
TGCGTCTGGG TGAGAAGCCA TGTCCATATT ACCTGCGAAC GGGAACTTGC 
450
AGATTCGGAG TTGCTTGCAA ATTCCACCAT CCTCAACCTG ATAATGGACA 
500
TTCTACTGCA TATGGAATGT CTAGCTTTCC TGCTGCAGAT TTACGATATG 
550
CTAGTGGTTT AACAATGATG TCTACATATG GAACTTTGCC TCGTCCGCAA 
600
GTTCCCCAGT CCTATGTGCC AATCCTGGTT TCACCCTCTC AAGGCTTTTT 
650
ACCTCCTCAA GGCTGGGCCC CTTACATGGC TGCATCTAAC TCCATGTACA 
700
ATGTGAAGAA TCAACCTTAT TACTCCGGTA GTAGTGCATC CATGGCCATG 
750
GCTGTGGCAT TGAACCGTGG TTTGTCAGAA AGTTCTGACC AACCAGAATG 
800
TCGGTTTTTT ATGAACACCG GGACATGTAA ATACGGAGAC GATTGCAAAT 
850
ACAGCCATCC CGGAGTAAGG ATTTCACAAC CACCACCAAG TCTTATAAAC 
900
CCTTTTGTTC TTCCAGCGAG ACCTGGACAA CCAGCTTGTG GTAACTTCAG 
950
GTCTTATGGA TTCTGCAAGT TTGGACCAAA CTGCAAATTC GACCACCCTA 
1000
TGCTGCCATA TCCGGGCCTG ACCATGGCTA CTTCTCTGCC TACTCCTTTT 
1050
GCTTCACCTG TTACAACCCA TCAGAGGATC TCACCAACAC CAAACCGCTC 
1100
TGATTCAAAG TCTCTTTCTA ATGGTAAACC TGATGTGAAG AAAGAAAGCT 
1150
CAGAGACTGA GAAACCAGAC AATGGAGAAG TGCAGGATTT GTCTGAGGAT 
1200
GCGTCATCAC CATGA
1250

>AT1G04990.1 longest ORF length:404
MRTPMSDTQH VQSSLVSIRS SDKIEDAFRK MKVNETGVEE LNPYPDRPGE 
50
RDCQFYLRTG LCGYGSSCRY NHPTHLPQDV AYYKEELPER IGQPDCEYFL 
100
KTGACKYGPT CKYHHPKDRN GAQPVMFNVI GLPMRLGEKP CPYYLRTGTC 
150
RFGVACKFHH PQPDNGHSTA YGMSSFPAAD LRYASGLTMM STYGTLPRPQ 
200
VPQSYVPILV SPSQGFLPPQ GWAPYMAASN SMYNVKNQPY YSGSSASMAM 
250
AVALNRGLSE SSDQPECRFF MNTGTCKYGD DCKYSHPGVR ISQPPPSLIN 
300
PFVLPARPGQ PACGNFRSYG FCKFGPNCKF DHPMLPYPGL TMATSLPTPF 
350
ASPVTTHQRI SPTPNRSDSK SLSNGKPDVK KESSETEKPD NGEVQDLSED 
400
ASSP
450