fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G05710 bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>AT1G05710.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 4
KpnI GGTAC|C 336
PstI CTGCA|G 246
StyI C|C[AT][AT]GG 107
XbaI T|CTAGA 10, 198


Click here to view TAIR data

>AT1G05710.2 length:516
ATGGAATTCT CTAGAGACGC TGGAATGATG ATGGAGAATA AGCGGAATGT 
50
CTGCTCTCTC GGAGAAAGCA GTATCAAACG CCACAAGTCT GATCTCTCTT 
100
TCAGTTCCAA GGAGAGGAAG GACAAGGTTG GAGAACGTAT TTCAGCTCTT 
150
CAACAAATAG TTTCCCCTTA TGGAAAGACC GACACTGCAT CAGTTCTTCT 
200
AGACGCGATG CATTACATAG AGTTTCTTCA CGAACAAGTG AAGGTCTGCA 
250
GTTCAATACC AAGCATGATT CATTCATCTT TATCTGAGTT CCCATGTTCT 
300
TTTGTACAGG TGCTAAGTGC TCCGTATCTG CAAACGGTAC CTGATGCTAC 
350
GCAGGAGGAG CTGGAGCAGT ACAGCCTGAG AAACAGAGGA TTATGTCTTG 
400
TTCCAATGGA GAATACAGTT GGAGTTGCTC AAAGCAACGG CGCTGATATA 
450
TGGGCGCCCG TGAAGACTCC TCTATCACCA GCTTTCAGTG TCACATCTCA 
500
ATCACCCTTT AGATGA
550

>AT1G05710.2 longest ORF length:171
MEFSRDAGMM MENKRNVCSL GESSIKRHKS DLSFSSKERK DKVGERISAL 
50
QQIVSPYGKT DTASVLLDAM HYIEFLHEQV KVCSSIPSMI HSSLSEFPCS 
100
FVQVLSAPYL QTVPDATQEE LEQYSLRNRG LCLVPMENTV GVAQSNGADI 
150
WAPVKTPLSP AFSVTSQSPF R
200