fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G05805 bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT1G05805.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 353, 939
EcoRV GAT|ATC 316
HindIII A|AGCTT 564
NheI G|CTAGC 652
StyI C|C[AT][AT]GG 737


Click here to view TAIR data

>AT1G05805.1 length:1089
ATGTACCAAT CATCATCCTC CACGTCATCA TCATCGCAGA GATCATCGCT 
50
TCCCGGCGGC GGAGGACTGA TCCGTTACGG CTCAGCTCCG GGATCGTTTC 
100
TAAACTCTGT GGTTGACGAA GTCATCGGAG GAGGCTCATC AAACGCTCGT 
150
GACTTCACCG GCTATCAACC GTCGTCGGAT AACTTCATCG GTAACTTTTT 
200
CACCGGAGCT GCTGACTCAT CCTCGCTGAG ATCCGATTCG ACGACTTGTG 
250
GAGTCAACAA CTCATCCGAC GGACAGAAAC AGCTAGGCAA TAACAATAAT 
300
AATAATAGTA ATAAAGATAT CTTCCTCGAC AGATCCTACG GTGGATTCAA 
350
CGAGATCTCG CAACAACACA AGAGCAACGA CATCGGAGGA GGAAACAGCT 
400
CAGGATCTTA CTCTCTCGCT AGACAACGTA GCTCTCCCGC CGATTTCTTC 
450
ACCTACCTCG CCTCAGATAA AAACAATTTC TCGTTGAACC AACCAACCAG 
500
TGATTATAGT CCGCAAGGAG GGTCTAATGG GGGACGAGGA CATTCCAGAT 
550
TGAAGTCTCA GCTAAGCTTC ACGAATCACG ACTCTCTGGC TCGGATCAAC 
600
GAGGTCAATG AGACCCCAGT CCACGACGGT TCAGGCCATT CGTTTTCTGC 
650
GGCTAGCTTT GGTGCAGCCA CTACTGATTC TTGGGATGAC GGTTCCGGTT 
700
CGATAGGGTT TACCGTGACT AGGCCCAGTA AACGATCCAA GGACATGGAC 
750
TCTGGTCTCT TTTCGCAGTA TAGTCTTCCT TCAGACACTT CAATGAACTA 
800
CATGGATAAC TTCATGCAGC TTCCAGAAGA TTCTGTACCC TGCAAAATCC 
850
GGGCCAAACG CGGCTGCGCC ACCCATCCTA GAAGCATCGC TGAGCGGGAG 
900
AGGAGAACGA GAATAAGTGG GAAGCTAAAG AAGCTACAAG ATCTTGTCCC 
950
CAACATGGAT AAGCAAACAA GCTATTCAGA CATGCTGGAT TTAGCTGTAC 
1000
AACACATCAA AGGCCTTCAG CATCAACTTC AGAATTTGAA AAAAGATCAA 
1050
GAGAATTGCA CGTGTGGGTG CAGTGAGAAA CCAAGCTAG
1100

>AT1G05805.1 longest ORF length:362
MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR 
50
DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN 
100
NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF 
150
TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN 
200
EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD 
250
SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE 
300
RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ 
350
ENCTCGCSEK PS
400