fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G07520 GRAS family transcription factor (.1)

>AT1G07520.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NotI, PacI, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1298
HindIII A|AGCTT 1730
NheI G|CTAGC 601
PstI CTGCA|G 574, 980
PvuII CAG|CTG 176, 1163
StyI C|C[AT][AT]GG 275, 1262
XbaI T|CTAGA 750


Click here to view TAIR data

>AT1G07520.1 length:2088
ATGGAATCGA ATTACTCAGG TGTGGTCAAC GGCTACGATG TGAGTTTCTT 
50
ACCAACTTCG ATTCCGGATC TTGGATTCGG TGTTCCTTCT TCTAGTGATT 
100
TTGATCTTCG GATGGATCAA TACTATCACC AACCTTCGAT TTGGGTTCCA 
150
GATCAAGATC ATCACTTTTC TCCACCAGCT GATGAGATTG ATTCTGAAAA 
200
CACCCTTTTG AAATATGTAA ACCAGCTCCT TATGGAAGAG AGTCTCGCTG 
250
AGAAGCAGTC TATCTTCTAT GATTCCTTGG CTCTTCGACA AACCGAGGAA 
300
ATGTTGCAGC AAGTCATCAG CGACTCGCAG ACTCAGTCTT CTATACCTAA 
350
TAATTCGATT ACTACCAGTA GTAGTAGTAA TAGTGGTGAT TATAGTAACA 
400
GCAGCAATTC TAGTGTACGC ATCGAGAATG AAGTGTTGTT TGATAATAAA 
450
CATCTTGGTG ATTCTGGTGT TGTGTCATTT CCAGGGTCTA ACATGTTGCG 
500
TGGAGGTGAG CAATTCGGGC AGCCAGCGAA TGAGATTCTT GTCAGGAGTA 
550
TGTTTAGTGA TGCAGAATCA GTTCTGCAGT TTAAGAGAGG GTTAGAGGAA 
600
GCTAGCAAGT TTCTTCCTAA TACTGATCAA TGGATCTTTA ATCTTGAGCC 
650
TGAGATGGAA AGAGTTGTTC CGGTGAAAGT AGAGGAAGGA TGGTCAGCTA 
700
TCTCGAAAAC TAGGAAGAAT CATCACGAGC GGGAAGAAGA AGAAGATGAT 
750
CTAGAGGAAG CTAGGAGGAG GAGTAAGCAA TTCGCAGTGA ATGAGGAAGA 
800
TGGGAAATTA ACAGAAATGT TTGATAAGGT TTTGCTTCTT GATGGTGAAT 
850
GCGATCCGCA GATTATCGAA GATGGCGAAA ATGGTTCAAG CAAGGCTCTG 
900
GTTAAGAAAG GCCGCGCGAA AAAGAAGAGT CGAGCGGTTG ATTTCCGCAC 
950
ACTTCTCACA CTATGCGCAC AATCTGTTTC TGCAGGGGAT AAGATTACGG 
1000
CTGATGATTT GCTGAGGCAG ATAAGGAAGC AATGTTCACC TGTTGGTGAT 
1050
GCATCACAGA GACTAGCTCA TTTCTTCGCC AATGCACTTG AGGCGCGTCT 
1100
TGAAGGTAGC ACAGGAACTA TGATCCAGAG TTATTACGAT TCCATTTCCT 
1150
CCAAGAAACG AACAGCTGCA CAGATTCTTA AATCCTATAG TGTGTTCTTG 
1200
TCTGCGTCTC CGTTTATGAC TTTGATCTAT TTCTTCTCCA ACAAGATGAT 
1250
TCTTGATGCT GCCAAGGATG CTTCGGTTCT TCATATAGTC GATTTTGGGA 
1300
TCCTTTATGG TTTCCAGTGG CCGATGTTTA TACAGCACTT ATCAAAGAGC 
1350
AACCCCGGAC TACGGAAACT ACGGATTACC GGTATCGAGA TTCCTCAACA 
1400
TGGGCTTCGT CCAACTGAAA GAATACAGGA TACAGGTCGA AGACTGACAG 
1450
AGTATTGCAA ACGGTTTGGT GTTCCATTTG AATACAATGC AATTGCGTCT 
1500
AAGAACTGGG AAACAATCAA GATGGAGGAG TTCAAGATCC GACCAAACGA 
1550
AGTTCTTGCA GTTAATGCTG TGCTCCGATT CAAGAACCTC CGAGATGTGA 
1600
TTCCAGGGGA AGAGGATTGC CCGAGGGACG GATTTCTAAA ACTGATCAGA 
1650
GACATGAACC CTAACGTTTT CCTCAGCTCG ACAGTCAATG GATCTTTCAA 
1700
CGCACCGTTC TTCACCACAC GGTTCAAAGA AGCTTTGTTT CACTACTCGG 
1750
CACTCTTTGA CTTGTTTGGT GCGACTCTGT CCAAAGAAAA CCCGGAGAGG 
1800
ATACATTTCG AAGGGGAGTT TTACGGGAGA GAAGTGATGA ATGTGATAGC 
1850
ATGTGAAGGA GTAGATAGAG TGGAGAGACC TGAGACGTAC AAGCAATGGC 
1900
AAGTGAGGAT GATAAGGGCT GGATTTAAAC AGAAGCCAGT GGAGGCAGAG 
1950
CTTGTGCAGT TATTTAGGGA AAAGATGAAG AAATGGGGTT ATCATAAAGA 
2000
CTTTGTCCTT GATGAAGATA GTAATTGGTT CTTACAAGGT TGGAAAGGTC 
2050
GCATCCTCTT CTCTTCTTCT TGTTGGGTCC CTTCTTAG
2100

>AT1G07520.1 longest ORF length:695
MESNYSGVVN GYDVSFLPTS IPDLGFGVPS SSDFDLRMDQ YYHQPSIWVP 
50
DQDHHFSPPA DEIDSENTLL KYVNQLLMEE SLAEKQSIFY DSLALRQTEE 
100
MLQQVISDSQ TQSSIPNNSI TTSSSSNSGD YSNSSNSSVR IENEVLFDNK 
150
HLGDSGVVSF PGSNMLRGGE QFGQPANEIL VRSMFSDAES VLQFKRGLEE 
200
ASKFLPNTDQ WIFNLEPEME RVVPVKVEEG WSAISKTRKN HHEREEEEDD 
250
LEEARRRSKQ FAVNEEDGKL TEMFDKVLLL DGECDPQIIE DGENGSSKAL 
300
VKKGRAKKKS RAVDFRTLLT LCAQSVSAGD KITADDLLRQ IRKQCSPVGD 
350
ASQRLAHFFA NALEARLEGS TGTMIQSYYD SISSKKRTAA QILKSYSVFL 
400
SASPFMTLIY FFSNKMILDA AKDASVLHIV DFGILYGFQW PMFIQHLSKS 
450
NPGLRKLRIT GIEIPQHGLR PTERIQDTGR RLTEYCKRFG VPFEYNAIAS 
500
KNWETIKMEE FKIRPNEVLA VNAVLRFKNL RDVIPGEEDC PRDGFLKLIR 
550
DMNPNVFLSS TVNGSFNAPF FTTRFKEALF HYSALFDLFG ATLSKENPER 
600
IHFEGEFYGR EVMNVIACEG VDRVERPETY KQWQVRMIRA GFKQKPVEAE 
650
LVQLFREKMK KWGYHKDFVL DEDSNWFLQG WKGRILFSSS CWVPS
700