fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G07530 SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)

>AT1G07530.1 CDS map

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Uncut enzymes: AatII, Acc65I, AclI, AfeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspMI, BspT107I(HgiCI), BsrGI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstZ17I, BtrI, ClaI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SfaNI, SfiI, SfoI, SmaI, SnaBI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 585
AccII(FnuDII) CG|CG 920, 1622, 1918
AccIII(BspMII) T|CCGGA 12
AciI C|CGC 1074, 1089, 1230, 1359, 2153
AflII C|TTAAG 1902
AflIII A|CPuPyGT 1394, 1418
AgeI A|CCGGT 610, 1342, 1603
AluI AG|CT 97, 196, 337, 727, 756, 872, 967, 990, 1204, 1333, 1441, 1590, 1611, 1755, 1857, 1992, 1996, 2148
AlwNI CAGNNN|CTG 2179
ApaLI G|TGCAC 1199
ApoI Pu|AATTPy 792
AvaI C|PyCGPuG 1839
AvaII G|G[AT]CC 595, 1339
BamHI G|GATCC 28, 141
BbvCI CC|TCAGC 1619
BclI T|GATCA 2226
BfaI C|TAG 426, 477, 591, 729, 1137, 1274, 1811, 1994, 1998
BglII A|GATCT 210, 1013, 1352
BlpI GC|TNAGC 1332, 1567
BsaBI GATNN|NNATC 2225
BsaJI C|CNNGG 24, 32, 137, 803, 1029
BsaWI [AT]|CCGG[AT] 12, 610, 1342, 1603
BsiHKAI G[AT]GC[AT]|C 1199
BslI CCNNNNN|NNGG 1623, 1641
BsoBI C|PyCGPuG 1839
Bsp1286I G[GAT]GC[CAT]|C 1199
BspEI T|CCGGA 12
BspHI T|CATGA 318
BsrBI GAG|CGG 1291
BsrDI GCAATGNN| 1282
BsrFI Pu|CCGGPy 610, 1342, 1603
BsrI ACTGGN| 512, 901, 2240
BssKI |CCNGG 24, 1029, 1575
BstBI TT|CGAA 672, 1371, 1595
BstF5I GGATGNN| 16, 1219
BstNI CC|[AT]GG 24, 1029, 1575
BstUI CG|CG 920, 1622, 1918
BstYI Pu|GATCPy 28, 141, 210, 1013, 1352
Bsu36I CC|TNAGG 90
BtgI C|CPuPyGG 32
BtsI GCAGTGNN| 2114
Cac8I GCN|NGC 478, 989, 1327, 1542, 1995, 2118
Cfr10I [AG]|CCGG[TC] 610, 1342, 1603
DdeI C|TNAG 89, 122, 343, 415, 745, 754, 817, 1156, 1245, 1331, 1566, 1588, 1618, 1720
DpnI GA-CH3|TC 27, 140, 209, 407, 1012, 1220, 1351, 1498, 1735, 1897, 2128, 2225
DpnII |GATC 27, 140, 209, 407, 1012, 1220, 1351, 1498, 1735, 1897, 2128, 2225
DraI TTT|AAA 682
DrdI GACNNNN|NNGTC 1095, 1419
EcoRI G|AATTC 792
Fnu4HI GC|NGC 339, 1386, 1443
HaeIII GG|CC 1025, 1539
HhaI GCG|C 919, 1621, 1919
HinP1I G|CGC 919, 1621, 1919
HindIII A|AGCTT 1591, 1756
HinfI G|ANTC 19, 249, 504, 1071, 1112, 1152, 1181, 1550, 1986, 2177, 2266
HpaII C|CGG 11, 609, 1341, 1602, 2136
Hpy188I TCN|GA 228, 246, 501, 816, 996, 1287, 1516, 1547, 1721, 1942, 2131, 2180
Hpy99I CG[AT]CG| 923
HpyCH4III ACN|GT 442, 601, 643, 1094, 1528, 1678, 1821, 2233
HpyCH4IV A|CGT 1379
HpyCH4V TG|CA 702, 1043, 1198, 1309, 1384, 1483, 1846, 2172
MboI |GATC 27, 140, 209, 407, 1012, 1220, 1351, 1498, 1735, 1897, 2128, 2225
MfeI C|AATTG 1715
MseI T|TAA 681, 828, 896, 1050, 1751, 1901
MslI CAPyNN|NNPuTG 515, 787, 875, 2286
MspA1I C[AC]G|C[GT]G 968, 1637
MspI C|CGG 11, 609, 1341, 1602, 2136
MwoI GCNNNNN|NNGC 336, 919, 1268, 1332, 1619
NcoI C|CATGG 32
NheI G|CTAGC 478, 1995
NlaIII CATG| 31, 317, 1393, 1417, 1468
NlaIV GGN|NCC 28, 141, 799, 1339, 1805, 2292
NsiI ATGCA|T 1044
NspI PuCATG|Py 1394, 1418
PciI A|CATGT 1394, 1418
PspGI |CC[AT]GG 24, 1029, 1575
PstI CTGCA|G 1385
PvuII CAG|CTG 968
RsaI GT|AC 1344, 1705, 2203
Sau3AI |GATC 27, 140, 209, 407, 1012, 1220, 1351, 1498, 1735, 1897, 2128, 2225
Sau96I G|GNCC 595, 1026, 1339
ScrFI CC|NGG 24, 1029, 1575
SexAI A|CC[AT]GGT 1576
SfcI C|TPuPyAG 200, 1067, 1385
SgrAI CPu|CCGGPyG 611
SmlI C|TPyPuAG 1902, 2158
SpeI A|CTAGT 1138
StyI C|C[AT][AT]GG 32, 137, 803
Taqƒ¿I T|CGA 671, 1370, 1594, 1672, 1743, 1759, 1988, 2193, 2217
TfiI G|A[AT]TC 19, 249, 504, 1071, 1112, 1152, 1550, 2177, 2266
TseI G|C[AT]GC 339, 1386, 1443
Tsp45I |GT[CG]AC 606, 1086, 1932, 1984
Tsp509I |AATT 569, 693, 791, 1597, 1714, 1910
TspRI NNCA[CG]TGNN| 512, 604, 1215, 1483, 1538, 2114
XbaI T|CTAGA 1812
XcmI CCANNNNN|NNNNTGG 41
XmnI GAANN|NNTTC 1646, 1885


Click here to view TAIR data

>AT1G07530.1 length:2310
ATGGGTTCTT ATCCGGATGG ATTCCCTGGA TCCATGGACG AGTTGGATTT 
50
CAATAAGGAC TTTGATTTGC CTCCCTCCTC AAACCAAACC TTAGGTTTAG 
100
CTAATGGGTT CTATTTAGAT GACTTAGATT TCTCATCCTT GGATCCTCCA 
150
GAGGCATATC CCTCCCAGAA CAACAACAAC AACAACATCA ACAACAAAGC 
200
TGTAGCAGGA GATCTGTTAT CATCTTCATC TGATGACGCT GATTTCTCTG 
250
ATTCTGTTTT GAAGTATATA AGCCAAGTTC TTATGGAAGA GGATATGGAA 
300
GAGAAGCCTT GTATGTTTCA TGACGCTTTG GCTCTTCAAG CTGCTGAGAA 
350
ATCTCTCTAT GAGGCTCTTG GTGAGAAATA CCCTTCTTCG TCTTCTGCTT 
400
CTTCTGTGGA TCATCCTGAG AGATTGGCTA GTGATAGCCC TGACGGTTCT 
450
TGTTCAGGTG GTGCTTTTAG TGATTACGCT AGCACCACTA CCACTACTTC 
500
CTCTGATTCT CACTGGAGTG TTGATGGTTT GGAGAATAGA CCTTCTTGGT 
550
TACATACACC TATGCCGAGT AATTTTGTTT TCCAGTCTAC TTCTAGGTCC 
600
AACAGTGTCA CCGGTGGTGG TGGTGGTGGT AATAGTGCGG TTTACGGTTC 
650
AGGTTTTGGC GATGATTTGG TTTCGAATAT GTTTAAAGAT GATGAATTGG 
700
CTATGCAGTT CAAGAAAGGG GTTGAGGAAG CTAGTAAGTT CCTTCCTAAG 
750
TCTTCTCAGC TCTTTATTGA TGTGGATAGT TACATCCCTA TGAATTCTGG 
800
TTCCAAGGAA AATGGTTCTG AGGTTTTTGT TAAGACGGAG AAGAAAGATG 
850
AGACAGAGCA TCATCATCAT CATAGCTATG CTCCTCCTCC CAACAGATTA 
900
ACTGGTAAGA AAAGCCATTG GCGCGACGAA GATGAAGATT TCGTTGAAGA 
950
AAGAAGTAAC AAGCAATCAG CTGTTTATGT TGAGGAAAGC GAGCTTTCTG 
1000
AAATGTTTGA TAAGATCTTG GTATGTGGCC CTGGGAAACC TGTATGCATT 
1050
CTTAACCAGA ACTTTCCTAC AGAATCCGCT AAAGTCGTGA CCGCACAGTC 
1100
AAATGGAGCA AAGATTCGTG GGAAGAAATC AACTTCTACT AGTCATAGTA 
1150
ACGATTCTAA GAAAGAAACT GCTGATTTGA GGACTCTTTT GGTGTTATGT 
1200
GCACAAGCTG TATCAGTGGA TGATCGTAGA ACCGCCAACG AAATGCTAAG 
1250
GCAGATACGA GAGCATTCTT CGCCTCTAGG CAATGGTTCA GAGCGGTTGG 
1300
CTCATTATTT TGCAAATAGT CTTGAAGCAC GCTTAGCTGG GACCGGTACA 
1350
CAGATCTACA CCGCTTTATC TTCGAAGAAA ACGTCTGCAG CAGACATGTT 
1400
GAAGGCTTAC CAGACATACA TGTCGGTCTG CCCTTTCAAG AAAGCTGCTA 
1450
TCATATTTGC TAACCACAGC ATGATGCGTT TCACTGCAAA CGCCAACACG 
1500
ATCCACATAA TAGATTTCGG AATATCTTAC GGTTTTCAGT GGCCTGCTCT 
1550
GATTCATCGC CTCTCGCTCA GCAGACCTGG TGGTTCGCCT AAGCTTCGAA 
1600
TTACCGGTAT AGAGCTTCCT CAGCGCGGTT TTAGACCAGC GGAAGGAGTT 
1650
CAGGAGACAG GTCATCGCTT GGCTCGATAC TGTCAGCGAC ACAATGTTCC 
1700
GTTTGAGTAC AACGCAATTG CTCAGAAATG GGAAACGATC CAAGTCGAAG 
1750
ACTTAAAGCT TCGACAAGGA GAGTATGTGG TTGTGAACTC TTTGTTCCGT 
1800
TTCAGGAACC TTCTAGATGA GACCGTTCTG GTAAACAGCC CGAGAGATGC 
1850
AGTTTTGAAG CTGATAAGAA AAATAAACCC GAATGTCTTC ATTCCAGCGA 
1900
TCTTAAGCGG GAATTACAAC GCGCCATTCT TTGTCACGAG GTTCAGAGAA 
1950
GCGTTGTTTC ATTACTCGGC TGTGTTTGAT ATGTGTGACT CGAAGCTAGC 
2000
TAGGGAAGAC GAGATGAGGC TGATGTATGA GAAAGAGTTT TATGGGAGAG 
2050
AGATTGTGAA TGTTGTGGCT TGTGAAGGAA CAGAGAGAGT GGAGAGACCA 
2100
GAGACATATA AGCAGTGGCA GGCGAGACTG ATCCGAGCCG GATTTAGACA 
2150
GCTTCCGCTT GAGAAGGAAC TGATGCAGAA TCTGAAGTTG AAAATCGAAA 
2200
ACGGGTACGA TAAAAACTTC GATGTTGATC AAAACGGTAA CTGGTTACTT 
2250
CAAGGGTGGA AAGGTAGAAT CGTGTATGCT TCATCTCTAT GGGTTCCTTC 
2300
GTCTTCATAG 
2350

>AT1G07530.1 longest ORF length:769
MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP 
50
EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME 
100
EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS 
150
CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS 
200
NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK 
250
SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL 
300
TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI 
350
LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC 
400
AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT 
450
QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT 
500
IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV 
550
QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR 
600
FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE 
650
ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP 
700
ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL 
750
QGWKGRIVYA SSLWVPSSS
800