Locus |
Common name |
Short description |
AT1G07640 |
OBP2, AtDof1. 1 |
Dof-type zinc finger DNA-binding family protein (.1.2.3) |
>AT1G07640.2 CDS map
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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, DraIII, DrdI, EagI, EarI, EciI, FauI, FokI, FseI, FspI, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, NaeI, , NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SgrAI, SmaI, SmlI, SnaBI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XcmI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
918 |
AciI
| C|CGC |
558 |
AclI
| AA|CGTT |
799 |
AgeI
| A|CCGGT |
903 |
AluI
| AG|CT |
39, 467, 477, 580 |
ApoI
| Pu|AATTPy |
9, 408 |
AvaI
| C|PyCGPuG |
969 |
AvaII
| G|G[AT]CC |
222, 972 |
BalI
| TGG|CCA |
69 |
BanI
| G|GPyPuCC |
343 |
BanII
| GPuGCPy|C |
729 |
BfaI
| C|TAG |
77, 215, 465, 617, 837, 897 |
BsaHI
| GPu|CGPyC |
343, 852, 918 |
BsaJI
| C|CNNGG |
72, 446, 630, 827, 925 |
BsaWI
| [AT]|CCGG[AT] |
858, 903, 910 |
BslI
| CCNNNNN|NNGG |
219, 366, 471, 657, 756, 909 |
BsoBI
| C|PyCGPuG |
969 |
Bsp1286I
| G[GAT]GC[CAT]|C |
729 |
BspDI
| AT|CGAT |
177 |
BspHI
| T|CATGA |
669 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
343 |
BsrFI
| Pu|CCGGPy |
903 |
BsrI
| ACTGGN| |
329 |
BssKI
| |CCNGG |
924, 954 |
BstAPI
| GCANNNN|NTGC |
316 |
BstBI
| TT|CGAA |
12 |
BstF5I
| GGATGNN| |
168 |
BstNI
| CC|[AT]GG |
924, 954 |
BstYI
| Pu|GATCPy |
721 |
BtgI
| C|CPuPyGG |
72, 630, 827 |
Cac8I
| GCN|NGC |
198 |
Cfr10I
| [AG]|CCGG[TC] |
903 |
ClaI
| AT|CGAT |
177 |
DdeI
| C|TNAG |
259, 292, 348, 470, 480, 554 |
DpnI
| GA-CH3|TC |
174, 589, 614, 720, 746, 983 |
DpnII
| |GATC |
174, 589, 614, 720, 746, 983 |
DraI
| TTT|AAA |
411 |
EaeI
| Py|GGCCPu |
69 |
EcoNI
| CCTNN|NNNAGG |
471 |
EcoO109I
| PuG|GNCCPy |
223, 973 |
EcoRI
| G|AATTC |
9 |
EcoRV
| GAT|ATC |
807 |
Fnu4HI
| GC|NGC |
373, 558 |
HaeII
| PuGCGC|Py |
343 |
HaeIII
| GG|CC |
68, 199, 951 |
HhaI
| GCG|C |
342 |
HinP1I
| G|CGC |
342 |
HincII
| GTPy|PuAC |
451 |
HinfI
| G|ANTC |
14, 246, 834, 929 |
HpaII
| C|CGG |
376, 857, 902, 909 |
Hpy188I
| TCN|GA |
535, 650, 848, 960 |
Hpy99I
| CG[AT]CG| |
321, 754, 779 |
HpyCH4III
| ACN|GT |
437, 781 |
HpyCH4IV
| A|CGT |
354, 798, 917 |
HpyCH4V
| TG|CA |
308 |
KasI
| G|GCGCC |
343 |
MboI
| |GATC |
174, 589, 614, 720, 746, 983 |
MscI
| TGG|CCA |
69 |
MseI
| T|TAA |
42, 410 |
MslI
| CAPyNN|NNPuTG |
134 |
MspI
| C|CGG |
376, 857, 902, 909 |
MwoI
| GCNNNNN|NNGC |
147, 189, 250, 316 |
NarI
| GG|CGCC |
343 |
NcoI
| C|CATGG |
630, 827 |
NlaIII
| CATG| |
134, 629, 668, 826 |
NlaIV
| GGN|NCC |
222, 343, 595, 972 |
PpuMI
| PuG|G[AT]CCPy |
223, 973 |
PspGI
| |CC[AT]GG |
924, 954 |
RsaI
| GT|AC |
80, 943 |
Sau3AI
| |GATC |
174, 589, 614, 720, 746, 983 |
Sau96I
| G|GNCC |
222, 972 |
ScaI
| AGT|ACT |
81, 944 |
ScrFI
| CC|NGG |
924, 954 |
SfcI
| C|TPuPyAG |
362 |
SfoI
| GGC|GCC |
343 |
SpeI
| A|CTAGT |
78 |
StyI
| C|C[AT][AT]GG |
630, 827 |
Taqƒ¿I
| T|CGA |
11, 176, 238, 744 |
TfiI
| G|A[AT]TC |
14, 834, 929 |
TseI
| G|C[AT]GC |
373 |
Tsp45I
| |GT[CG]AC |
301 |
Tsp509I
| |AATT |
8, 407, 881 |
XbaI
| T|CTAGA |
898 |
XmnI
| GAANN|NNTTC |
642 |
Click here to view TAIR data
>AT1G07640.2 length:996
ATGCCTACGA ATTCGAATCA TCAGCATCAT CTTCAACACC AGCTTAACGA | 50 |
AAATGGAAGT ATAATAAGTG GCCACGGACT AGTACTCTCT CACCAACTTC | 100 |
CACCTCTCCA AGCAAACCCT AACCCTAACC ACCACCATGT CGCTACCTCT | 150 |
GCTGGTCTTC CGTCAAGGAT GGGTGGATCG ATGGCGGAGA GAGCAAGGCA | 200 |
GGCCAACATT CCTCCACTAG CGGGACCCCT AAAGTGTCCT CGATGCGACT | 250 |
CCAGCAACAC TAAGTTCTGT TACTACAACA ACTATAACCT CACTCAGCCT | 300 |
CGTCACTTCT GCAAAGGTTG CCGTCGCTAC TGGACACAAG GGGGCGCCCT | 350 |
GAGAAACGTC CCTGTAGGTG GAGGCTGCCG GAGGAATAAC AAGAAGGGCA | 400 |
AAAATGGAAA TTTAAAATCT TCTTCTTCTT CGTCCAAACA GTCTTCCTCG | 450 |
GTCAACGCTC AAAGTCCTAG CTCAGGACAG CTAAGGACAA ATCATCAGTT | 500 |
CCCTTTTTCA CCAACTCTTT ACAATCTCAC TCAACTCGGA GGTATTGGTT | 550 |
TGAACTTAGC CGCTACTAAT GGCAACAACC AAGCTCACCA GATCGGTTCC | 600 |
AGTTTGATGA TGAGCGATCT AGGGTTTCTC CATGGACGAA ATACTTCAAC | 650 |
TCCGATGACG GGAAACATTC ATGAAAACAA CAACAATAAT AACAATGAAA | 700 |
ACAACCTAAT GGCATCCGTT GGATCTTTGA GCCCCTTTGC TCTCTTCGAT | 750 |
CCAACGACGG GGCTATACGC TTTCCAGAAC GACGGTAATA TCGGGAACAA | 800 |
CGTTGGGATA TCTGGTTCTT CTACTTCCAT GGTTGATTCT AGGGTTTATC | 850 |
AGACGCCTCC GGTGAAGATG GAAGAACAAC CTAATTTGGC TAACTTGTCT | 900 |
AGACCGGTCT CCGGTTTGAC GTCTCCTGGG AATCAAACAA ATCAGTACTT | 950 |
TTGGCCTGGT TCGGATTTCT CGGGTCCTTC TAATGATCTC TTGTGA | 1000 |
>AT1G07640.2 longest ORF length:331
MPTNSNHQHH LQHQLNENGS IISGHGLVLS HQLPPLQANP NPNHHHVATS | 50 |
AGLPSRMGGS MAERARQANI PPLAGPLKCP RCDSSNTKFC YYNNYNLTQP | 100 |
RHFCKGCRRY WTQGGALRNV PVGGGCRRNN KKGKNGNLKS SSSSSKQSSS | 150 |
VNAQSPSSGQ LRTNHQFPFS PTLYNLTQLG GIGLNLAATN GNNQAHQIGS | 200 |
SLMMSDLGFL HGRNTSTPMT GNIHENNNNN NNENNLMASV GSLSPFALFD | 250 |
PTTGLYAFQN DGNIGNNVGI SGSSTSMVDS RVYQTPPVKM EEQPNLANLS | 300 |
RPVSGLTSPG NQTNQYFWPG SDFSGPSNDL L | 350 |
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