fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G07640 OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3)

>AT1G07640.2 CDS map

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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, DraIII, DrdI, EagI, EarI, EciI, FauI, FokI, FseI, FspI, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, NaeI, , NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SgrAI, SmaI, SmlI, SnaBI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 918
AciI C|CGC 558
AclI AA|CGTT 799
AgeI A|CCGGT 903
AluI AG|CT 39, 467, 477, 580
ApoI Pu|AATTPy 9, 408
AvaI C|PyCGPuG 969
AvaII G|G[AT]CC 222, 972
BalI TGG|CCA 69
BanI G|GPyPuCC 343
BanII GPuGCPy|C 729
BfaI C|TAG 77, 215, 465, 617, 837, 897
BsaHI GPu|CGPyC 343, 852, 918
BsaJI C|CNNGG 72, 446, 630, 827, 925
BsaWI [AT]|CCGG[AT] 858, 903, 910
BslI CCNNNNN|NNGG 219, 366, 471, 657, 756, 909
BsoBI C|PyCGPuG 969
Bsp1286I G[GAT]GC[CAT]|C 729
BspDI AT|CGAT 177
BspHI T|CATGA 669
BspT107I(HgiCI) G|G[TC][AG]CC 343
BsrFI Pu|CCGGPy 903
BsrI ACTGGN| 329
BssKI |CCNGG 924, 954
BstAPI GCANNNN|NTGC 316
BstBI TT|CGAA 12
BstF5I GGATGNN| 168
BstNI CC|[AT]GG 924, 954
BstYI Pu|GATCPy 721
BtgI C|CPuPyGG 72, 630, 827
Cac8I GCN|NGC 198
Cfr10I [AG]|CCGG[TC] 903
ClaI AT|CGAT 177
DdeI C|TNAG 259, 292, 348, 470, 480, 554
DpnI GA-CH3|TC 174, 589, 614, 720, 746, 983
DpnII |GATC 174, 589, 614, 720, 746, 983
DraI TTT|AAA 411
EaeI Py|GGCCPu 69
EcoNI CCTNN|NNNAGG 471
EcoO109I PuG|GNCCPy 223, 973
EcoRI G|AATTC 9
EcoRV GAT|ATC 807
Fnu4HI GC|NGC 373, 558
HaeII PuGCGC|Py 343
HaeIII GG|CC 68, 199, 951
HhaI GCG|C 342
HinP1I G|CGC 342
HincII GTPy|PuAC 451
HinfI G|ANTC 14, 246, 834, 929
HpaII C|CGG 376, 857, 902, 909
Hpy188I TCN|GA 535, 650, 848, 960
Hpy99I CG[AT]CG| 321, 754, 779
HpyCH4III ACN|GT 437, 781
HpyCH4IV A|CGT 354, 798, 917
HpyCH4V TG|CA 308
KasI G|GCGCC 343
MboI |GATC 174, 589, 614, 720, 746, 983
MscI TGG|CCA 69
MseI T|TAA 42, 410
MslI CAPyNN|NNPuTG 134
MspI C|CGG 376, 857, 902, 909
MwoI GCNNNNN|NNGC 147, 189, 250, 316
NarI GG|CGCC 343
NcoI C|CATGG 630, 827
NlaIII CATG| 134, 629, 668, 826
NlaIV GGN|NCC 222, 343, 595, 972
PpuMI PuG|G[AT]CCPy 223, 973
PspGI |CC[AT]GG 924, 954
RsaI GT|AC 80, 943
Sau3AI |GATC 174, 589, 614, 720, 746, 983
Sau96I G|GNCC 222, 972
ScaI AGT|ACT 81, 944
ScrFI CC|NGG 924, 954
SfcI C|TPuPyAG 362
SfoI GGC|GCC 343
SpeI A|CTAGT 78
StyI C|C[AT][AT]GG 630, 827
Taqƒ¿I T|CGA 11, 176, 238, 744
TfiI G|A[AT]TC 14, 834, 929
TseI G|C[AT]GC 373
Tsp45I |GT[CG]AC 301
Tsp509I |AATT 8, 407, 881
XbaI T|CTAGA 898
XmnI GAANN|NNTTC 642


Click here to view TAIR data

>AT1G07640.2 length:996
ATGCCTACGA ATTCGAATCA TCAGCATCAT CTTCAACACC AGCTTAACGA 
50
AAATGGAAGT ATAATAAGTG GCCACGGACT AGTACTCTCT CACCAACTTC 
100
CACCTCTCCA AGCAAACCCT AACCCTAACC ACCACCATGT CGCTACCTCT 
150
GCTGGTCTTC CGTCAAGGAT GGGTGGATCG ATGGCGGAGA GAGCAAGGCA 
200
GGCCAACATT CCTCCACTAG CGGGACCCCT AAAGTGTCCT CGATGCGACT 
250
CCAGCAACAC TAAGTTCTGT TACTACAACA ACTATAACCT CACTCAGCCT 
300
CGTCACTTCT GCAAAGGTTG CCGTCGCTAC TGGACACAAG GGGGCGCCCT 
350
GAGAAACGTC CCTGTAGGTG GAGGCTGCCG GAGGAATAAC AAGAAGGGCA 
400
AAAATGGAAA TTTAAAATCT TCTTCTTCTT CGTCCAAACA GTCTTCCTCG 
450
GTCAACGCTC AAAGTCCTAG CTCAGGACAG CTAAGGACAA ATCATCAGTT 
500
CCCTTTTTCA CCAACTCTTT ACAATCTCAC TCAACTCGGA GGTATTGGTT 
550
TGAACTTAGC CGCTACTAAT GGCAACAACC AAGCTCACCA GATCGGTTCC 
600
AGTTTGATGA TGAGCGATCT AGGGTTTCTC CATGGACGAA ATACTTCAAC 
650
TCCGATGACG GGAAACATTC ATGAAAACAA CAACAATAAT AACAATGAAA 
700
ACAACCTAAT GGCATCCGTT GGATCTTTGA GCCCCTTTGC TCTCTTCGAT 
750
CCAACGACGG GGCTATACGC TTTCCAGAAC GACGGTAATA TCGGGAACAA 
800
CGTTGGGATA TCTGGTTCTT CTACTTCCAT GGTTGATTCT AGGGTTTATC 
850
AGACGCCTCC GGTGAAGATG GAAGAACAAC CTAATTTGGC TAACTTGTCT 
900
AGACCGGTCT CCGGTTTGAC GTCTCCTGGG AATCAAACAA ATCAGTACTT 
950
TTGGCCTGGT TCGGATTTCT CGGGTCCTTC TAATGATCTC TTGTGA
1000

>AT1G07640.2 longest ORF length:331
MPTNSNHQHH LQHQLNENGS IISGHGLVLS HQLPPLQANP NPNHHHVATS 
50
AGLPSRMGGS MAERARQANI PPLAGPLKCP RCDSSNTKFC YYNNYNLTQP 
100
RHFCKGCRRY WTQGGALRNV PVGGGCRRNN KKGKNGNLKS SSSSSKQSSS 
150
VNAQSPSSGQ LRTNHQFPFS PTLYNLTQLG GIGLNLAATN GNNQAHQIGS 
200
SLMMSDLGFL HGRNTSTPMT GNIHENNNNN NNENNLMASV GSLSPFALFD 
250
PTTGLYAFQN DGNIGNNVGI SGSSTSMVDS RVYQTPPVKM EEQPNLANLS 
300
RPVSGLTSPG NQTNQYFWPG SDFSGPSNDL L
350