fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G07980 NF-YC10 "nuclear factor Y, subunit C10", nuclear factor Y, subunit C10 (.1)

>AT1G07980.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 152
EcoRI G|AATTC 260
HindIII A|AGCTT 449
HpaI GTT|AAC 118
StyI C|C[AT][AT]GG 20


Click here to view TAIR data

>AT1G07980.1 length:621
ATGGTGTCGT CAAAGAAACC CAAGGAGAAG AAGGCGAGGA GCGATGTCGT 
50
CGTCAATAAA GCGAGTGGTC GGAGTAAACG CAGCTCCGGT TCCAGAACGA 
100
AGAAGACGTC GAACAAGGTT AACATTGTGA AGAAGAAGCC GGAGATTTAC 
150
GAGATCTCAG AATCATCGAG CAGTGACTCT GTGGAAGAAG CAATAAGAGG 
200
CGATGAGGCG AAGAAAAGTA ACGGCGTCGT GAGCAAGAGG GGTAACGGAA 
250
AGAGTGTAGG AATTCCGACG AAGACGAGTA AAAATCGAGA AGAGGACGAT 
300
GGAGGCGCGG AAGATGCTAA GATCAAGTTT CCGATGAATC GGATTCGGCG 
350
GATCATGAGA AGCGATAATT CTGCTCCTCA GATTATGCAG GATGCTGTAT 
400
TTCTTGTCAA CAAAGCCACG GAGATGTTCA TTGAGCGGTT TTCTGAAGAA 
450
GCTTATGATA GTTCCGTCAA GGACAAAAAG AAATTCATCC ACTACAAACA 
500
CCTCTCATCC GTAGTGAGTA ACGACCAGAG ATACGAGTTC CTTGCAGATA 
550
GTGTTCCCGA GAAACTTAAA GCAGAGGCCG CGTTGGAGGA ATGGGAAAGA 
600
GGCATGACAG ATGCAGGCTG A
650

>AT1G07980.1 longest ORF length:206
MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY 
50
EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD 
100
GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE 
150
AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER 
200
GMTDAG
250