fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G08000 GATA10 GATA transcription factor 10 (.1.2)

>AT1G08000.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 331, 886
StyI C|C[AT][AT]GG 167, 212
XhoI C|TCGAG 379


Click here to view TAIR data

>AT1G08000.2 length:927
ATGAATTGGT TACCTGAAGC TGAAGCTGAG GAGCACTTGA AAGGTATTCT 
50
CTCTGGTGAT TTCTTTGATG GTCTCACCAA TCACCTTGAT TGCCCACTTG 
100
AAGACATCGA TTCCACCAAT GGTGAGGGAG ATTGGGTCGC CAGGTTTCAA 
150
GACCTTGAGC CTCCTCCCTT GGATATGTTC CCTGCTTTGC CTTCTGACCT 
200
CACCTCTTGT CCCAAGGGCG CCGCTCGTGT GCGGATTCCC AACAACATGA 
250
TTCCTGCTTT GAAGCAGTCC TGTTCTTCTG AAGCCTTGTC CGGCATTAAT 
300
AGCACTCCCC ACCAATCTTC AGCTCCTCCT GATATCAAAG TTTCATATCT 
350
ATTTCAGTCT CTAACTCCAG TGTCAGTTCT CGAGAACAGT TATGGTTCTC 
400
TCTCCACCCA AAACTCCGGA TCTCAGAGAT TGGCTTTCCC TGTGAAAGGC 
450
ATGAGAAGCA AGCGCAGACG CCCCACAACA GTGAGACTTA GCTACCTTTT 
500
CCCCTTTGAA CCCAGAAAGT CAACTCCGGG TGAATCAGTA ACCGAGGGTT 
550
ACTATTCTTC TGAGCAACAT GCCAAGAAGA AGCGCAAGAT TCATCTGATC 
600
ACCCACACCG AGTCTTCCAC TTTGGAGTCA AGTAAGTCGG ATGGGATAGT 
650
CCGGATATGC ACTCATTGTG AGACAATCAC GACCCCACAG TGGAGGCAAG 
700
GACCCAGTGG ACCCAAGACC CTCTGCAACG CTTGCGGAGT CCGGTTCAAA 
750
TCTGGTCGCC TAGTTCCAGA ATACCGGCCA GCCTCAAGCC CGACCTTCAT 
800
CCCATCTGTG CATTCAAACT CACACAGGAA GATCATTGAG ATGAGAAAGA 
850
AGGACGACGA GTTTGATACC AGCATGATTC GCAGTGATAT CCAGAAGGTA 
900
AAGCAGGGGA GGAAGAAAAT GGTATAA
950

>AT1G08000.2 longest ORF length:308
MNWLPEAEAE EHLKGILSGD FFDGLTNHLD CPLEDIDSTN GEGDWVARFQ 
50
DLEPPPLDMF PALPSDLTSC PKGAARVRIP NNMIPALKQS CSSEALSGIN 
100
STPHQSSAPP DIKVSYLFQS LTPVSVLENS YGSLSTQNSG SQRLAFPVKG 
150
MRSKRRRPTT VRLSYLFPFE PRKSTPGESV TEGYYSSEQH AKKKRKIHLI 
200
THTESSTLES SKSDGIVRIC THCETITTPQ WRQGPSGPKT LCNACGVRFK 
250
SGRLVPEYRP ASSPTFIPSV HSNSHRKIIE MRKKDDEFDT SMIRSDIQKV 
300
KQGRKKMV
350