fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G08010 GATA11 GATA transcription factor 11 (.1.2)

>AT1G08010.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 754
EcoRV GAT|ATC 897
NcoI C|CATGG 167
PvuII CAG|CTG 809
SmaI CCC|GGG 531
StyI C|C[AT][AT]GG 167, 224
XhoI C|TCGAG 376


Click here to view TAIR data

>AT1G08010.2 length:912
ATGAATTGGT TACCTGAAGC TGAAGCTGAG GATGACTTCA AAGGTCTTCT 
50
CTCTGGTGAT TTCTTTGATG ATCTCATCAA TCACCTTGAC GTCCCTCTTG 
100
ATGACATTGA TACCACCAAT GGTGAAGGAG ATTGGGTTGA CAGGTTTCAA 
150
GACCTTGAGC CTCCTCCCAT GGATATGTTC CCCACTTTGC CTTCTGACCT 
200
CACCTCTTGC GGCTCTGGCA TGGCCAAGGC CCCTCGTGTG GATATTCAAA 
250
GGAACATTCC TGCTTTGAAA CAGTCCTATT CTTCTGAAGC CTTGTCCAGC 
300
ACTCTCCACC AATCTTCAGC TCCTCCTGAA ATCAAAGTTT CGAAACTATT 
350
TCAGTCTTTA AGTCCAGTGT CAGTTCTCGA GAACAGTTAT GGTTCTCTCT 
400
CGACCCACAA CAATGGATCT CAGAGATTGG CTTTCCCTGT GAAAGGCATG 
450
AGAAGCAAGC GCAAACGCCC CACAACACTG AGACTTAGCT ACCTTTTCCC 
500
CTCTGAACCC CGAAAGCCCG AGAAGTCAAC CCCGGGCAAA CCTGAATCCG 
550
AGTGTTACTT TTCTTCTGAG CAACATGCCA AGAAGAAACG CAAGATCCAC 
600
CTGACCACCC GCACGGTCTC TTCCACTCTG GAGGCAAGCA ACTCGGATGG 
650
GATAGTCCGC AAATGCACTC ATTGCGAGAC AACCAAGACC CCACAGTGGA 
700
GGGAAGGACC CAGTGGACCG AAGACCCTCT GCAATGCTTG CGGAGTGAGG 
750
TTCAGATCTG GTCGCCTAGT TCCAGAATAC CGACCAGCCT CAAGCCCCAC 
800
CTTCATCCCA GCTGTGCATT CAAACTCACA CAGGAAGATC ATTGAGATGA 
850
GAAGGAAGGA CGACGAACAG TTTGATAGCA GCATGATTCG GGCAGTGATA 
900
TCCAGAGGGT AA
950

>AT1G08010.2 longest ORF length:303
MNWLPEAEAE DDFKGLLSGD FFDDLINHLD VPLDDIDTTN GEGDWVDRFQ 
50
DLEPPPMDMF PTLPSDLTSC GSGMAKAPRV DIQRNIPALK QSYSSEALSS 
100
TLHQSSAPPE IKVSKLFQSL SPVSVLENSY GSLSTHNNGS QRLAFPVKGM 
150
RSKRKRPTTL RLSYLFPSEP RKPEKSTPGK PESECYFSSE QHAKKKRKIH 
200
LTTRTVSSTL EASNSDGIVR KCTHCETTKT PQWREGPSGP KTLCNACGVR 
250
FRSGRLVPEY RPASSPTFIP AVHSNSHRKI IEMRRKDDEQ FDSSMIRAVI 
300
SRG
350