fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G08970 NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)

>AT1G08970.3 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, SacI, SalI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 15
PstI CTGCA|G 563
PvuII CAG|CTG 118, 160
SmaI CCC|GGG 470
StyI C|C[AT][AT]GG 15


Click here to view TAIR data

>AT1G08970.3 length:696
ATGGATCAAC AAGACCATGG ACAGTCTGGA GCTATGAACT ATGGCACAAA 
50
CCCATACCAA ACCAACCCGA TGAGCACCAC TGCTGCTACT GTAGCAGGAG 
100
GTGCGGCACA ACCAGGCCAG CTGGCGTTCC ACCAGATCCA TCAGCAGCAG 
150
CAGCAGCAAC AGCTGGCACA GCAGCTTCAA GCATTTTGGG AGAACCAATT 
200
CAAAGAGATT GAGAAGACTA CCGATTTCAA GAACCACAGC CTTCCCCTTG 
250
CGAGAATCAA GAAAATCATG AAAGCGGATG AAGATGTCCG TATGATCTCG 
300
GCTGAGGCGC CTGTCGTGTT TGCAAGGGCC TGTGAGATGT TCATCCTGGA 
350
GCTGACACTC AGGTCGTGGA ACCACACTGA GGAGAATAAG AGGCGGACGT 
400
TGCAGAAGAA CGATATTGCT GCTGCTGTGA CTAGAACCGA TATTTTTGAT 
450
TTCCTTGTGG ATATTGTTCC CCGGGAGGAT CTCCGAGATG AAGTCTTGGG 
500
AAGTATTCCG AGGGGCACTG TCCCGGAAGC TGCTGCTGCT GGTTACCCGT 
550
ATGGATACTT GCCTGCAGGA ACTGCTCCAA TAGGAAATCC GGGAATGGTT 
600
ATGGGTAATC CCGGTGGTGC GTATCCACCT AATCCTTATA TGGGTCAACC 
650
AATGTGGCAA CAACAGGCAC CTGACCAACC TGACCAGGAA AATTAG
700

>AT1G08970.3 longest ORF length:231
MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ 
50
QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS 
100
AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD 
150
FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV 
200
MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
250