Locus |
Common name |
Short description |
AT1G08970 |
NF-YC9, HAP5C |
"nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) |
>AT1G08970.3 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, SacI, SalI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
NcoI
| C|CATGG |
15 |
PstI
| CTGCA|G |
563 |
PvuII
| CAG|CTG |
118, 160 |
SmaI
| CCC|GGG |
470 |
StyI
| C|C[AT][AT]GG |
15 |
Click here to view TAIR data
>AT1G08970.3 length:696
ATGGATCAAC AAGACCATGG ACAGTCTGGA GCTATGAACT ATGGCACAAA | 50 |
CCCATACCAA ACCAACCCGA TGAGCACCAC TGCTGCTACT GTAGCAGGAG | 100 |
GTGCGGCACA ACCAGGCCAG CTGGCGTTCC ACCAGATCCA TCAGCAGCAG | 150 |
CAGCAGCAAC AGCTGGCACA GCAGCTTCAA GCATTTTGGG AGAACCAATT | 200 |
CAAAGAGATT GAGAAGACTA CCGATTTCAA GAACCACAGC CTTCCCCTTG | 250 |
CGAGAATCAA GAAAATCATG AAAGCGGATG AAGATGTCCG TATGATCTCG | 300 |
GCTGAGGCGC CTGTCGTGTT TGCAAGGGCC TGTGAGATGT TCATCCTGGA | 350 |
GCTGACACTC AGGTCGTGGA ACCACACTGA GGAGAATAAG AGGCGGACGT | 400 |
TGCAGAAGAA CGATATTGCT GCTGCTGTGA CTAGAACCGA TATTTTTGAT | 450 |
TTCCTTGTGG ATATTGTTCC CCGGGAGGAT CTCCGAGATG AAGTCTTGGG | 500 |
AAGTATTCCG AGGGGCACTG TCCCGGAAGC TGCTGCTGCT GGTTACCCGT | 550 |
ATGGATACTT GCCTGCAGGA ACTGCTCCAA TAGGAAATCC GGGAATGGTT | 600 |
ATGGGTAATC CCGGTGGTGC GTATCCACCT AATCCTTATA TGGGTCAACC | 650 |
AATGTGGCAA CAACAGGCAC CTGACCAACC TGACCAGGAA AATTAG | 700 |
>AT1G08970.3 longest ORF length:231
MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ | 50 |
QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS | 100 |
AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD | 150 |
FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV | 200 |
MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N | 250 |
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