|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G09710 | Homeodomain-like superfamily protein (.1.2) |
>AT1G09710.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, KpnI, NcoI, NheI, NotI, PacI, SacI, SalI, SmaI, XbaI
| Name | Recognition sequence | Cut positions |
| EcoRV | GAT|ATC | 117 |
| HindIII | A|AGCTT | 302, 859 |
| HpaI | GTT|AAC | 811 |
| NdeI | CA|TATG | 371 |
| PstI | CTGCA|G | 311, 1082, 1634 |
| PvuII | CAG|CTG | 566, 1085 |
| SpeI | A|CTAGT | 19 |
| StyI | C|C[AT][AT]GG | 481, 1385, 1609 |
| XhoI | C|TCGAG | 1010 |
Click here to view TAIR data
>AT1G09710.1 length:1833
ATGGTTGCTA ATAATAATAC TAGTAGCAAT CGCAGGAAGA GAATCATTAC | 50 |
TGAAGGCGAC ATCGCCACTC TTTTGCTGAG ATATGATATG GAGACGATAC | 100 |
TGAGAATGCT ACAGGAGATA TCTTATTGTT CCGAAACCAA GATGGACTGG | 150 |
AATGCGTTGG TGAAGAAGAC CACTACCGGA ATTACTAATG CTAGAGAGTA | 200 |
CCAGTTGCTA TGGCGTCATC TTTCTTATCG GCATCCTCTC CTCCCTGTGG | 250 |
AAGATGATGC TCTACCTCTG GACGACGATA GTGACATGGA GTGCGAATTG | 300 |
GAAGCTTCTC CTGCAGTCAG CCATGAAGCA TCAGTGGAGG CTATTGCACA | 350 |
TGTCAAAGTG ATGGCTGCTT CATATGTTCT AAGTGAGTCT GATATACTCG | 400 |
ACGATTCAAC AGTTGAGGCT CCCTTGACTA TAAACATACC TTATGCTTTG | 450 |
CCTGAGGGTT CTCAGGAACC ATCAGAGTCT CCTTGGTCGT CAAGAGGGAT | 500 |
GAATATCAAC TTTCCGGTCT GTCTTCAGAA AGTTACATCT ACCGAGGGGA | 550 |
TGAATGGAAA TGGTTCAGCT GGTATTAGCA TGGCTTTTCG GAGGAAAAGG | 600 |
AAAAGATGGT CTGCTGAGGA GGATGAGGAG CTGTTCGCCG CTGTAAAGCG | 650 |
ATGTGGTGAA GGGAACTGGG CTCATATTGT TAAGGGAGAC TTTAGAGGAG | 700 |
AGAGAACCGC CTCCCAACTC TCGCAGAGGT GGGCGCTTAT AAGAAAAAGG | 750 |
TGTCACACTT CGACCTCTGT TAGCCAATGT GGCCTACAAG GAACTGAAGC | 800 |
GAAACTAGCA GTTAACCATG CATTATCTTT AGCTCTGGGA AATCGGCCCC | 850 |
CTTCAAATAA GCTTGCAATA GGTCTTATGC CAACGACGTC ATCTTGTACC | 900 |
ATCACAGAAA CGGAAGCGAA TGGGGGAAGT TCTTCTCAAG GTCAACAACA | 950 |
GTCCAAACCA ATTGTTCAAG CATTGCCTCG GGCAGGAACA TCACTTCCGG | 1000 |
CTGCAAAGTC TCGAGTTGTT AAAAAAACAA CAGCAAGCTC CACTTCCAGA | 1050 |
TCGGATCTTA TGGTAACAGC TAATTCAGTA GCTGCAGCTG CATGCATGGG | 1100 |
TGATGTATTG ACTGCTGCAT CAGGACGAAA GGTCGAACCT GGAAAAACTG | 1150 |
ATGCTCCACG AGTGCCAAAG ACTAAACCTG TAAAACATGC TTCTACAGTC | 1200 |
TGCATGCCTC AGCCCTCAGG TAGCCTCTCC ATGCCAAAGG TTGAACCAGG | 1250 |
AACGAGTGTT GCCGCCTCTA TACGGTCTCT AGCTAATGGA AAATTGAAAC | 1300 |
CTGTTATGGC TTCATCATCT TCCAACAAAC CTCCTCTCAT AGCTCCTCGT | 1350 |
TCAGAAGGAT CTTCAATGCT TTCTGCTTCC GCCCCCTTGG CTTCTCTATC | 1400 |
AAGGATTGTC TCCAATCAGA GAGTTTTTGC AGGCTCTGTC CCAGCTACTG | 1450 |
AGATTGTCAC TTGCAAACCA GATGGTGGAC AGAAAGGGCA AGCTCGTGGA | 1500 |
AATGAAGCAA GCTCATCGGC TGCAATCCAG CCACATCAAA TAACCTCAAG | 1550 |
AAACTTGGAG ATTAGCCAGG GAAAGCAGGC TACACAGGCT CAGTCCCCTA | 1600 |
ATCTCTTGCC TAGGAAAGTT CCAGTAGTTC GGACTGCAGT TCATTGTGCC | 1650 |
ACTAACCAAA AGTTGATGGA TAAACCATCT GATCAAACTG TAGTACCTAT | 1700 |
CAGAGGAGCT GGTTCGCAAT CTAAAGCCAA AGGTGAAGTA AACAGTAAGG | 1750 |
TTGGTCCGGT GATCAAAGTG AGTAGTGTTT GCGGAAAACC CCTTGAGGTT | 1800 |
GCAACTGTGG CAGGGACCGG ACAGGGTGTT TAG | 1850 |
>AT1G09710.1 longest ORF length:610
MVANNNTSSN RRKRIITEGD IATLLLRYDM ETILRMLQEI SYCSETKMDW | 50 |
NALVKKTTTG ITNAREYQLL WRHLSYRHPL LPVEDDALPL DDDSDMECEL | 100 |
EASPAVSHEA SVEAIAHVKV MAASYVLSES DILDDSTVEA PLTINIPYAL | 150 |
PEGSQEPSES PWSSRGMNIN FPVCLQKVTS TEGMNGNGSA GISMAFRRKR | 200 |
KRWSAEEDEE LFAAVKRCGE GNWAHIVKGD FRGERTASQL SQRWALIRKR | 250 |
CHTSTSVSQC GLQGTEAKLA VNHALSLALG NRPPSNKLAI GLMPTTSSCT | 300 |
ITETEANGGS SSQGQQQSKP IVQALPRAGT SLPAAKSRVV KKTTASSTSR | 350 |
SDLMVTANSV AAAACMGDVL TAASGRKVEP GKTDAPRVPK TKPVKHASTV | 400 |
CMPQPSGSLS MPKVEPGTSV AASIRSLANG KLKPVMASSS SNKPPLIAPR | 450 |
SEGSSMLSAS APLASLSRIV SNQRVFAGSV PATEIVTCKP DGGQKGQARG | 500 |
NEASSSAAIQ PHQITSRNLE ISQGKQATQA QSPNLLPRKV PVVRTAVHCA | 550 |
TNQKLMDKPS DQTVVPIRGA GSQSKAKGEV NSKVGPVIKV SSVCGKPLEV | 600 |
ATVAGTGQGV | 650 |