fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G10120 bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT1G10120.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AluI AG|CT 173, 361, 475, 572, 1092
ApoI Pu|AATTPy 487
AvaI C|PyCGPuG 907
BamHI G|GATCC 138
BanII GPuGCPy|C 573, 1093
BclI T|GATCA 356, 516, 543
BfaI C|TAG 69, 276, 998, 1096
BglII A|GATCT 870
BsaBI GATNN|NNATC 137, 389
BsaJI C|CNNGG 194, 211
BsaWI [AT]|CCGG[AT] 253, 736
BsiHKAI G[AT]GC[AT]|C 573, 1093
BslI CCNNNNN|NNGG 430, 506, 906, 924
BsoBI C|PyCGPuG 907
Bsp1286I G[GAT]GC[CAT]|C 573, 1093
BspHI T|CATGA 378
BsrBI GAG|CGG 661
BsrFI Pu|CCGGPy 925
BssKI |CCNGG 210, 240, 717
BstF5I GGATGNN| 216, 693, 722
BstNI CC|[AT]GG 210
BstXI CCANNNNN|NTGG 200
BstYI Pu|GATCPy 65, 111, 138, 870
BtgI C|CPuPyGG 194
Cac8I GCN|NGC 163, 273
Cfr10I [AG]|CCGG[TC] 925
DdeI C|TNAG 988, 1090
DpnI GA-CH3|TC 64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869
DpnII |GATC 64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869
DraIII CACNNN|GTG 581
Fnu4HI GC|NGC 153, 159, 261
HinfI G|ANTC 369, 456, 827, 857, 914, 1033
HpaII C|CGG 240, 252, 717, 735, 924
Hpy188I TCN|GA 333, 358, 399, 518, 545, 989
Hpy99I CG[AT]CG| 820
HpyCH4III ACN|GT 558, 649, 822
HpyCH4V TG|CA 100, 127, 259, 655, 722, 783, 876
MboI |GATC 64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869
MseI T|TAA 36
MslI CAPyNN|NNPuTG 47, 199, 539, 613
MspI C|CGG 240, 252, 717, 735, 924
MwoI GCNNNNN|NNGC 159, 172
NciI CC|[CG]GG 240, 717
NcoI C|CATGG 194
NdeI CA|TATG 613
NlaIII CATG| 41, 193, 268, 377
NlaIV GGN|NCC 138
NspI PuCATG|Py 269
PflFI GACN|NNGTC 1056
PspGI |CC[AT]GG 210
PstI CTGCA|G 128, 877
SacI GAGCT|C 573, 1093
Sau3AI |GATC 64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869
ScrFI CC|NGG 210, 240, 717
SfcI C|TPuPyAG 128, 877
SspI AAT|ATT 841
StyI C|C[AT][AT]GG 194
Taqƒ¿I T|CGA 753, 1049, 1078
TfiI G|A[AT]TC 369, 456, 827, 857, 914, 1033
TseI G|C[AT]GC 153, 159, 261
Tsp45I |GT[CG]AC 646
Tsp509I |AATT 79, 313, 486
TspRI NNCA[CG]TGNN| 685
Tth111I GACN|NNGTC 1056
XbaI T|CTAGA 70
XmnI GAANN|NNTTC 713


Click here to view TAIR data

>AT1G10120.1 length:1101
ATGGGTGGTG AGAGTAATGA AGGAGGAGAG ATGGGCTTTA AGCATGGAGA 
50
TGATGAGAGT GGTGGGATCT CTAGAGTTGG AATTACATCA ATGCCCTTGT 
100
ATGCAAAGGC AGATCCTTTC TTCTCTTCTG CAGATTGGGA TCCAGTTGTC 
150
AATGCTGCTG CTGCTGGCTT CTCCAGCTCT CATTACCATC CTTCCATGGC 
200
GATGGATAAT CCAGGGATGA GTTGCTTCTC TCATTACCAA CCCGGTTCTG 
250
TTTCCGGTTT TGCAGCAGAC ATGCCTGCTA GTCTTCTTCC GTTTGGTGAT 
300
TGTGGTGGTG GTCAAATTGG TCATTTTCTT GGTTCAGACA AGAAAGGGGA 
350
AAGATTGATC AGAGCTGGAG AATCATCTCA TGAGGATCAT CATCAGGTTT 
400
CAGATGATGC TGTTCTTGGT GCTTCCCCAG TTGGGAAAAG AAGGCTACCT 
450
GAAGCCGAAT CACAATGGAA CAAGAAAGCT GTGGAGGAAT TTCAAGAAGA 
500
CCCTCAAAGG GGAAATGATC AGAGCCAGAA GAAGCATAAA AATGATCAGA 
550
GTAAAGAGAC GGTGAACAAG GAGAGCTCAC AAAGTGAAGA AGCACCGAAA 
600
GAAAACTACA TTCATATGAG GGCAAGAAGA GGTCAAGCCA CTAATAGTCA 
650
CAGTCTTGCA GAGCGGGTTA GAAGAGAAAA GATCAGTGAA AGGATGAGAT 
700
TGCTTCAAGA ACTTGTTCCC GGATGCAACA AGATCACCGG AAAAGCGGTT 
750
ATGCTCGATG AAATAATCAA CTATGTTCAG TCATTGCAAC AGCAAGTTGA 
800
GTTTTTGTCT ATGAAACTTG CGACGGTGAA TCCAGAGATC AATATTGATA 
850
TAGACAGGAT TCTCGCCAAA GATCTTCTGC AGTCAAGAGA CAGAAACACT 
900
CCTACACTCG GGCTGAATCC TTTTGCCGGT TTTCAAGGGA ACATACCAAA 
950
CCTTTCTGCC ACCACAAATC CACAATACAA CCCACTACCT CAGACAACAC 
1000
TAGAGAGTGA ACTACAAAAC CTTTACCAGA TGGGATTCGT CTCAAATCCA 
1050
TCGACTATGT CCAGTTTCTC ACCTAATGGT CGATTGAAAC CTGAGCTCTA 
1100
G
1150

>AT1G10120.1 longest ORF length:366
MGGESNEGGE MGFKHGDDES GGISRVGITS MPLYAKADPF FSSADWDPVV 
50
NAAAAGFSSS HYHPSMAMDN PGMSCFSHYQ PGSVSGFAAD MPASLLPFGD 
100
CGGGQIGHFL GSDKKGERLI RAGESSHEDH HQVSDDAVLG ASPVGKRRLP 
150
EAESQWNKKA VEEFQEDPQR GNDQSQKKHK NDQSKETVNK ESSQSEEAPK 
200
ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV 
250
MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRILAK DLLQSRDRNT 
300
PTLGLNPFAG FQGNIPNLSA TTNPQYNPLP QTTLESELQN LYQMGFVSNP 
350
STMSSFSPNG RLKPEL
400