Locus |
Common name |
Short description |
AT1G10120 |
bHLH074, CIB4 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT1G10120.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, XcmI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AluI
| AG|CT |
173, 361, 475, 572, 1092 |
ApoI
| Pu|AATTPy |
487 |
AvaI
| C|PyCGPuG |
907 |
BamHI
| G|GATCC |
138 |
BanII
| GPuGCPy|C |
573, 1093 |
BclI
| T|GATCA |
356, 516, 543 |
BfaI
| C|TAG |
69, 276, 998, 1096 |
BglII
| A|GATCT |
870 |
BsaBI
| GATNN|NNATC |
137, 389 |
BsaJI
| C|CNNGG |
194, 211 |
BsaWI
| [AT]|CCGG[AT] |
253, 736 |
BsiHKAI
| G[AT]GC[AT]|C |
573, 1093 |
BslI
| CCNNNNN|NNGG |
430, 506, 906, 924 |
BsoBI
| C|PyCGPuG |
907 |
Bsp1286I
| G[GAT]GC[CAT]|C |
573, 1093 |
BspHI
| T|CATGA |
378 |
BsrBI
| GAG|CGG |
661 |
BsrFI
| Pu|CCGGPy |
925 |
BssKI
| |CCNGG |
210, 240, 717 |
BstF5I
| GGATGNN| |
216, 693, 722 |
BstNI
| CC|[AT]GG |
210 |
BstXI
| CCANNNNN|NTGG |
200 |
BstYI
| Pu|GATCPy |
65, 111, 138, 870 |
BtgI
| C|CPuPyGG |
194 |
Cac8I
| GCN|NGC |
163, 273 |
Cfr10I
| [AG]|CCGG[TC] |
925 |
DdeI
| C|TNAG |
988, 1090 |
DpnI
| GA-CH3|TC |
64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869 |
DpnII
| |GATC |
64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869 |
DraIII
| CACNNN|GTG |
581 |
Fnu4HI
| GC|NGC |
153, 159, 261 |
HinfI
| G|ANTC |
369, 456, 827, 857, 914, 1033 |
HpaII
| C|CGG |
240, 252, 717, 735, 924 |
Hpy188I
| TCN|GA |
333, 358, 399, 518, 545, 989 |
Hpy99I
| CG[AT]CG| |
820 |
HpyCH4III
| ACN|GT |
558, 649, 822 |
HpyCH4V
| TG|CA |
100, 127, 259, 655, 722, 783, 876 |
MboI
| |GATC |
64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869 |
MseI
| T|TAA |
36 |
MslI
| CAPyNN|NNPuTG |
47, 199, 539, 613 |
MspI
| C|CGG |
240, 252, 717, 735, 924 |
MwoI
| GCNNNNN|NNGC |
159, 172 |
NciI
| CC|[CG]GG |
240, 717 |
NcoI
| C|CATGG |
194 |
NdeI
| CA|TATG |
613 |
NlaIII
| CATG| |
41, 193, 268, 377 |
NlaIV
| GGN|NCC |
138 |
NspI
| PuCATG|Py |
269 |
PflFI
| GACN|NNGTC |
1056 |
PspGI
| |CC[AT]GG |
210 |
PstI
| CTGCA|G |
128, 877 |
SacI
| GAGCT|C |
573, 1093 |
Sau3AI
| |GATC |
64, 110, 137, 355, 383, 515, 542, 679, 730, 835, 869 |
ScrFI
| CC|NGG |
210, 240, 717 |
SfcI
| C|TPuPyAG |
128, 877 |
SspI
| AAT|ATT |
841 |
StyI
| C|C[AT][AT]GG |
194 |
Taqƒ¿I
| T|CGA |
753, 1049, 1078 |
TfiI
| G|A[AT]TC |
369, 456, 827, 857, 914, 1033 |
TseI
| G|C[AT]GC |
153, 159, 261 |
Tsp45I
| |GT[CG]AC |
646 |
Tsp509I
| |AATT |
79, 313, 486 |
TspRI
| NNCA[CG]TGNN| |
685 |
Tth111I
| GACN|NNGTC |
1056 |
XbaI
| T|CTAGA |
70 |
XmnI
| GAANN|NNTTC |
713 |
Click here to view TAIR data
>AT1G10120.1 length:1101
ATGGGTGGTG AGAGTAATGA AGGAGGAGAG ATGGGCTTTA AGCATGGAGA | 50 |
TGATGAGAGT GGTGGGATCT CTAGAGTTGG AATTACATCA ATGCCCTTGT | 100 |
ATGCAAAGGC AGATCCTTTC TTCTCTTCTG CAGATTGGGA TCCAGTTGTC | 150 |
AATGCTGCTG CTGCTGGCTT CTCCAGCTCT CATTACCATC CTTCCATGGC | 200 |
GATGGATAAT CCAGGGATGA GTTGCTTCTC TCATTACCAA CCCGGTTCTG | 250 |
TTTCCGGTTT TGCAGCAGAC ATGCCTGCTA GTCTTCTTCC GTTTGGTGAT | 300 |
TGTGGTGGTG GTCAAATTGG TCATTTTCTT GGTTCAGACA AGAAAGGGGA | 350 |
AAGATTGATC AGAGCTGGAG AATCATCTCA TGAGGATCAT CATCAGGTTT | 400 |
CAGATGATGC TGTTCTTGGT GCTTCCCCAG TTGGGAAAAG AAGGCTACCT | 450 |
GAAGCCGAAT CACAATGGAA CAAGAAAGCT GTGGAGGAAT TTCAAGAAGA | 500 |
CCCTCAAAGG GGAAATGATC AGAGCCAGAA GAAGCATAAA AATGATCAGA | 550 |
GTAAAGAGAC GGTGAACAAG GAGAGCTCAC AAAGTGAAGA AGCACCGAAA | 600 |
GAAAACTACA TTCATATGAG GGCAAGAAGA GGTCAAGCCA CTAATAGTCA | 650 |
CAGTCTTGCA GAGCGGGTTA GAAGAGAAAA GATCAGTGAA AGGATGAGAT | 700 |
TGCTTCAAGA ACTTGTTCCC GGATGCAACA AGATCACCGG AAAAGCGGTT | 750 |
ATGCTCGATG AAATAATCAA CTATGTTCAG TCATTGCAAC AGCAAGTTGA | 800 |
GTTTTTGTCT ATGAAACTTG CGACGGTGAA TCCAGAGATC AATATTGATA | 850 |
TAGACAGGAT TCTCGCCAAA GATCTTCTGC AGTCAAGAGA CAGAAACACT | 900 |
CCTACACTCG GGCTGAATCC TTTTGCCGGT TTTCAAGGGA ACATACCAAA | 950 |
CCTTTCTGCC ACCACAAATC CACAATACAA CCCACTACCT CAGACAACAC | 1000 |
TAGAGAGTGA ACTACAAAAC CTTTACCAGA TGGGATTCGT CTCAAATCCA | 1050 |
TCGACTATGT CCAGTTTCTC ACCTAATGGT CGATTGAAAC CTGAGCTCTA | 1100 |
G | 1150 |
>AT1G10120.1 longest ORF length:366
MGGESNEGGE MGFKHGDDES GGISRVGITS MPLYAKADPF FSSADWDPVV | 50 |
NAAAAGFSSS HYHPSMAMDN PGMSCFSHYQ PGSVSGFAAD MPASLLPFGD | 100 |
CGGGQIGHFL GSDKKGERLI RAGESSHEDH HQVSDDAVLG ASPVGKRRLP | 150 |
EAESQWNKKA VEEFQEDPQR GNDQSQKKHK NDQSKETVNK ESSQSEEAPK | 200 |
ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV | 250 |
MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRILAK DLLQSRDRNT | 300 |
PTLGLNPFAG FQGNIPNLSA TTNPQYNPLP QTTLESELQN LYQMGFVSNP | 350 |
STMSSFSPNG RLKPEL | 400 |
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