fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G10200 WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1)

>AT1G10200.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 95, 133, 222
HpaI GTT|AAC 66
PstI CTGCA|G 171
PvuII CAG|CTG 490
SalI G|TCGAC 58
StyI C|C[AT][AT]GG 548


Click here to view TAIR data

>AT1G10200.1 length:573
ATGGCGTTCG CAGGAACAAC CCAGAAATGC ATGGCATGTG ACAAAACAGT 
50
TTATCTTGTC GACAAGTTAA CCGCCGATAA CCGGGTCTAC CACAAAGCTT 
100
GTTTCCGATG TCACCATTGC AAAGGAACTC TCAAGCTTAG CAATTACAAC 
150
TCCTTTGAAG GAGTTCTCTA CTGCAGACCA CATTTCGATC AAAACTTCAA 
200
GAGAACTGGA AGTCTTGAGA AAAGCTTCGA AGGGACACCA AAGATTGGGA 
250
AACCTGATAG GCCTTTGGAG GGAGAGAGAC CTGCTGGAAC CAAAGTTTCG 
300
AATATGTTTG GTGGAACACG AGAGAAATGC GTTGGTTGCG ACAAAACCGT 
350
GTATCCAATT GAGAAGGTAT CGGTGAATGG AACATTGTAC CACAAGAGCT 
400
GCTTCAAGTG TACACATGGA GGCTGCACGA TAAGCCCTTC GAATTACATA 
450
GCTCACGAGG GTAAGCTATA TTGCAAGCAT CATCATATTC AGCTGATCAA 
500
GGAGAAAGGA AACTTGAGCC AGCTCGAAGG AGGAGGAGAG AATGCCGCCA 
550
AGGACAAAGT CGTCGCTGCT TAA
600

>AT1G10200.1 longest ORF length:190
MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN 
50
SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS 
100
NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI 
150
AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA 
200