fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G12260 ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)

>AT1G12260.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 3
NcoI C|CATGG 145
NdeI CA|TATG 625, 632
PstI CTGCA|G 476
SacI GAGCT|C 553
StyI C|C[AT][AT]GG 145, 1064
XhoI C|TCGAG 556, 852


Click here to view TAIR data

>AT1G12260.1 length:1188
ATGAATTCAT TTTCCCACGT CCCTCCGGGT TTTAGATTTC ACCCGACAGA 
50
TGAAGAACTT GTAGACTACT ACCTGAGGAA AAAAGTCGCA TCGAAGAGAA 
100
TAGAAATTGA TTTCATAAAG GACATTGATC TTTACAAGAT TGAGCCATGG 
150
GACCTTCAAG AGTTGTGCAA AATTGGGCAT GAAGAGCAGA GTGATTGGTA 
200
CTTCTTTAGC CATAAAGACA AGAAGTATCC CACAGGGACT CGAACCAATA 
250
GAGCAACAAA AGCAGGGTTT TGGAAAGCCA CCGGAAGAGA TAAGGCTATC 
300
TATTTGAGGC ATAGTCTAAT TGGCATGAGG AAAACACTTG TGTTTTACAA 
350
GGGAAGAGCC CCAAATGGAC AAAAGTCTGA TTGGATCATG CACGAATACC 
400
GCTTAGAAAC CGATGAAAAC GGAACTCCTC AGGAAGAAGG ATGGGTTGTG 
450
TGTAGGGTTT TCAAGAAGAG ATTGGCTGCA GTTAGACGAA TGGGAGATTA 
500
CGACTCATCC CCTTCACATT GGTACGATGA TCAACTTTCT TTTATGGCCT 
550
CCGAGCTCGA GACAAACGGT CAACGACGGA TTCTCCCCAA TCATCATCAG 
600
CAGCAGCAGC ACGAGCACCA ACAACATATG CCATATGGCC TCAATGCATC 
650
TGCTTACGCT CTCAACAACC CTAACTTGCA ATGCAAGCAA GAGCTAGAAC 
700
TACACTACAA CCACCTGGTA CAACGAAATC ATCTTCTTGA TGAATCTCAT 
750
TTATCGTTCC TCCAACTTCC TCAACTAGAA AGCCCTAAGA TTCAACAAGA 
800
TAACAGTAAT TGCAACTCTC TTCCTTATGG AACAAGCAAC ATCGATAATA 
850
ACTCGAGCCA TAATGCTAAC TTGCAGCAAT CAAATATCGC GCATGAGGAA 
900
CAATTGAATC AAGGAAATCA GAACTTCAGC TCTCTATACA TGAACAGCGG 
950
CAACGAGCAA GTGATGGACC AAGTCACAGA CTGGAGAGTT CTCGATAAAT 
1000
TTGTTGCTTC TCAGCTAAGC AACGAGGAGG CTGCCACAGC TTCTGCATCT 
1050
ATACAGAATA ATGCCAAGGA CACAAGCAAT GCTGAGTACC AAGTTGATGA 
1100
AGAAAAAGAT CCGAAAAGGG CTTCAGACAT GGGAGAAGAA TATACTGCTT 
1150
CTACTTCTTC GAGTTGTCAG ATTGATCTAT GGAAGTGA
1200

>AT1G12260.1 longest ORF length:395
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW 
50
DLQELCKIGH EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI 
100
YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV 
150
CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ 
200
QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLV QRNHLLDESH 
250
LSFLQLPQLE SPKIQQDNSN CNSLPYGTSN IDNNSSHNAN LQQSNIAHEE 
300
QLNQGNQNFS SLYMNSGNEQ VMDQVTDWRV LDKFVASQLS NEEAATASAS 
350
IQNNAKDTSN AEYQVDEEKD PKRASDMGEE YTASTSSSCQ IDLWK
400