fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G12630 Integrase-type DNA-binding superfamily protein (.1)

>AT1G12630.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 45, 223
EcoRI G|AATTC 546
NcoI C|CATGG 143
StyI C|C[AT][AT]GG 143


Click here to view TAIR data

>AT1G12630.1 length:579
ATGAATAGTT CAATGGCTTC TGCCGGCTTA GGTAGCCGGA GAAAGGATCC 
50
GGTGTACAGA GGAATCCGGT GCCGAAGTGG GAAATGGGTC TCCGAGATTC 
100
GTGAGCCGAG GAAAACCACG AGAATCTGGC TTGGAACTTA CCCCATGGCA 
150
GAGATGGCAG CAGCCGCCTA TGATGTGGCT GCTATGGCTC TTAAAGGAAG 
200
AGAAGCTGTC TTGAACTTCC CTGGATCCGT CGGGTCATAC CCGGTTCCTG 
250
AATCAACATC CGCAGCAGAT ATACGAGCCG CTGCGGCAGC CGCAGCAGCA 
300
ATGAAGGGAT GTGAGGAAGG GGAGGAGGAG AAAAAGGCAA AGGAGAAGAA 
350
GAGTAGTAGT TCGAAGTCGA GAGCGCGTGA GTGCCACGTA GATAATGATG 
400
TTGGATCTTC GTCGTGGTGT GGGACAGAGT TCATGGACGA AGAAGAAGTC 
450
TTGAATATGC CTAATCTGCT GGCTAATATG GCAGAAGGGA TGATGGTTGC 
500
GCCGCCGTCG TGGATGGGTT CTCGGCCGTC GGATGACTCT CCGGAGAATT 
550
CAAATGATGA GGACTTGTGG GGCTATTGA
600

>AT1G12630.1 longest ORF length:192
MNSSMASAGL GSRRKDPVYR GIRCRSGKWV SEIREPRKTT RIWLGTYPMA 
50
EMAAAAYDVA AMALKGREAV LNFPGSVGSY PVPESTSAAD IRAAAAAAAA 
100
MKGCEEGEEE KKAKEKKSSS SKSRARECHV DNDVGSSSWC GTEFMDEEEV 
150
LNMPNLLANM AEGMMVAPPS WMGSRPSDDS PENSNDEDLW GY
200