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| Locus | Common name | Short description |
| AT1G12890 | Integrase-type DNA-binding superfamily protein (.1) |
>AT1G12890.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MseI, MspI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TfiI, TliI, Tsp45I, XbaI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 77 |
| AclI | AA|CGTT | 144 |
| AluI | AG|CT | 97, 163, 211 |
| BalI | TGG|CCA | 447 |
| BclI | T|GATCA | 438 |
| BfaI | C|TAG | 209, 300 |
| BsaBI | GATNN|NNATC | 437 |
| BsaHI | GPu|CGPyC | 77 |
| BsaJI | C|CNNGG | 63, 82 |
| BstYI | Pu|GATCPy | 295 |
| BtgI | C|CPuPyGG | 82 |
| DdeI | C|TNAG | 551, 558 |
| DpnI | GA-CH3|TC | 192, 294, 320, 353, 437 |
| DpnII | |GATC | 192, 294, 320, 353, 437 |
| EaeI | Py|GGCCPu | 447 |
| Fnu4HI | GC|NGC | 96, 165, 186, 202 |
| HaeIII | GG|CC | 446 |
| HincII | GTPy|PuAC | 628 |
| HinfI | G|ANTC | 387 |
| Hpy188I | TCN|GA | 106, 608 |
| Hpy99I | CG[AT]CG| | 563, 632 |
| HpyCH4III | ACN|GT | 266, 487, 644 |
| HpyCH4IV | A|CGT | 76, 143, 180 |
| HpyCH4V | TG|CA | 94, 172, 529 |
| MboI | |GATC | 192, 294, 320, 353, 437 |
| MscI | TGG|CCA | 447 |
| MslI | CAPyNN|NNPuTG | 527 |
| MspA1I | C[AC]G|C[GT]G | 98, 201 |
| MwoI | GCNNNNN|NNGC | 162 |
| N.BstNBI | GAGTCNNNN|N | 392 |
| NcoI | C|CATGG | 82 |
| NdeI | CA|TATG | 176, 283, 538 |
| NlaIII | CATG| | 81, 440, 521 |
| NlaIV | GGN|NCC | 276 |
| PflFI | GACN|NNGTC | 511 |
| PsiI | TTA|TAA | 426 |
| PvuII | CAG|CTG | 98 |
| RsaI | GT|AC | 58 |
| Sau3AI | |GATC | 192, 294, 320, 353, 437 |
| StyI | C|C[AT][AT]GG | 63, 82 |
| Taqƒ¿I | T|CGA | 190 |
| TseI | G|C[AT]GC | 96, 165, 186 |
| Tsp509I | |AATT | 599 |
| TspRI | NNCA[CG]TGNN| | 235 |
| Tth111I | GACN|NNGTC | 511 |
| XcmI | CCANNNNN|NNNNTGG | 546 |
Click here to view TAIR data
>AT1G12890.1 length:660
ATGTTGAAAT CAAGTAACAA GAGAAAAAGC AAAGAAGAGA AGAAGTTACA | 50 |
AGAAGGGAAG TACCTTGGAG TGAGGAGACG TCCATGGGGA AGATATGCAG | 100 |
CTGAAATCAG AAACCCTTTT ACTAAAGAAA GACATTGGCT TGGAACGTTT | 150 |
GATACAGCCG AAGAAGCTGC TTTTGCATAT GACGTTGCTG CTCGATCCAT | 200 |
CAGCGGCTCT CTAGCTACAA CAAACTTCTT CTACACTGAA AACACCTCTT | 250 |
TAGAAAGACA TCCACAACAG TCTTTGGAGC CTCATATGAC TTGGGGATCT | 300 |
TCTAGTCTCT GTCTTCTTCA AGATCAGCCT TTTGAAAACA ACCATTTTGT | 350 |
TGCTGATCCT ATCTCTTCTT CTTTTTCTCA AAAACAAGAG TCTTCTACCA | 400 |
ATCTCACTAA CACTTTCTCA CATTGTTATA ATGATGGTGA TCATGTTGGC | 450 |
CAAAGCAAAG AGATTTCTTT ACCTAATGAT ATGTCAAACA GTTTATTCGG | 500 |
TCATCAGGAC AAAGTCGGTG AACATGACAA TGCAGACCAT ATGAAGTTTG | 550 |
GCTCAGTTCT CAGCGACGAA CCTCTCTGCT TTGAGTATGA CTACATTGGG | 600 |
AATTATCTTC AGAGTTTTCT CAAAGATGTC AACGACGATG CTCCACAGTT | 650 |
TCTTATGTGA | 700 |
>AT1G12890.1 longest ORF length:219
MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF | 50 |
DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS | 100 |
SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG | 150 |
QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG | 200 |
NYLQSFLKDV NDDAPQFLM | 250 |