fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G12890 Integrase-type DNA-binding superfamily protein (.1)

>AT1G12890.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 82
NdeI CA|TATG 176, 283, 538
PvuII CAG|CTG 98
StyI C|C[AT][AT]GG 63, 82


Click here to view TAIR data

>AT1G12890.1 length:660
ATGTTGAAAT CAAGTAACAA GAGAAAAAGC AAAGAAGAGA AGAAGTTACA 
50
AGAAGGGAAG TACCTTGGAG TGAGGAGACG TCCATGGGGA AGATATGCAG 
100
CTGAAATCAG AAACCCTTTT ACTAAAGAAA GACATTGGCT TGGAACGTTT 
150
GATACAGCCG AAGAAGCTGC TTTTGCATAT GACGTTGCTG CTCGATCCAT 
200
CAGCGGCTCT CTAGCTACAA CAAACTTCTT CTACACTGAA AACACCTCTT 
250
TAGAAAGACA TCCACAACAG TCTTTGGAGC CTCATATGAC TTGGGGATCT 
300
TCTAGTCTCT GTCTTCTTCA AGATCAGCCT TTTGAAAACA ACCATTTTGT 
350
TGCTGATCCT ATCTCTTCTT CTTTTTCTCA AAAACAAGAG TCTTCTACCA 
400
ATCTCACTAA CACTTTCTCA CATTGTTATA ATGATGGTGA TCATGTTGGC 
450
CAAAGCAAAG AGATTTCTTT ACCTAATGAT ATGTCAAACA GTTTATTCGG 
500
TCATCAGGAC AAAGTCGGTG AACATGACAA TGCAGACCAT ATGAAGTTTG 
550
GCTCAGTTCT CAGCGACGAA CCTCTCTGCT TTGAGTATGA CTACATTGGG 
600
AATTATCTTC AGAGTTTTCT CAAAGATGTC AACGACGATG CTCCACAGTT 
650
TCTTATGTGA 
700

>AT1G12890.1 longest ORF length:219
MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF 
50
DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS 
100
SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG 
150
QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG 
200
NYLQSFLKDV NDDAPQFLM
250