Locus |
Common name |
Short description |
AT1G12890 |
|
Integrase-type DNA-binding superfamily protein (.1) |
>AT1G12890.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
NcoI
| C|CATGG |
82 |
NdeI
| CA|TATG |
176, 283, 538 |
PvuII
| CAG|CTG |
98 |
StyI
| C|C[AT][AT]GG |
63, 82 |
Click here to view TAIR data
>AT1G12890.1 length:660
ATGTTGAAAT CAAGTAACAA GAGAAAAAGC AAAGAAGAGA AGAAGTTACA | 50 |
AGAAGGGAAG TACCTTGGAG TGAGGAGACG TCCATGGGGA AGATATGCAG | 100 |
CTGAAATCAG AAACCCTTTT ACTAAAGAAA GACATTGGCT TGGAACGTTT | 150 |
GATACAGCCG AAGAAGCTGC TTTTGCATAT GACGTTGCTG CTCGATCCAT | 200 |
CAGCGGCTCT CTAGCTACAA CAAACTTCTT CTACACTGAA AACACCTCTT | 250 |
TAGAAAGACA TCCACAACAG TCTTTGGAGC CTCATATGAC TTGGGGATCT | 300 |
TCTAGTCTCT GTCTTCTTCA AGATCAGCCT TTTGAAAACA ACCATTTTGT | 350 |
TGCTGATCCT ATCTCTTCTT CTTTTTCTCA AAAACAAGAG TCTTCTACCA | 400 |
ATCTCACTAA CACTTTCTCA CATTGTTATA ATGATGGTGA TCATGTTGGC | 450 |
CAAAGCAAAG AGATTTCTTT ACCTAATGAT ATGTCAAACA GTTTATTCGG | 500 |
TCATCAGGAC AAAGTCGGTG AACATGACAA TGCAGACCAT ATGAAGTTTG | 550 |
GCTCAGTTCT CAGCGACGAA CCTCTCTGCT TTGAGTATGA CTACATTGGG | 600 |
AATTATCTTC AGAGTTTTCT CAAAGATGTC AACGACGATG CTCCACAGTT | 650 |
TCTTATGTGA | 700 |
>AT1G12890.1 longest ORF length:219
MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF | 50 |
DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS | 100 |
SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG | 150 |
QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG | 200 |
NYLQSFLKDV NDDAPQFLM | 250 |
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