|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G13260 | EDF4, RAV1 | ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) |
>AT1G13260.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccI, AccIII(BspMII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrFI, BsrI, BssHII, BstAPI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, XbaI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 298, 949 |
| AccII(FnuDII) | CG|CG | 245, 301 |
| AciI | C|CGC | 282 |
| AclI | AA|CGTT | 658 |
| AluI | AG|CT | 151, 165, 220, 594 |
| ApoI | Pu|AATTPy | 339, 384 |
| AvaI | C|PyCGPuG | 256 |
| BanI | G|GPyPuCC | 195 |
| BanII | GPuGCPy|C | 221 |
| BfaI | C|TAG | 159, 486 |
| BglII | A|GATCT | 826 |
| BsaAI | PyAC|GTPu | 797 |
| BsaHI | GPu|CGPyC | 298, 328, 461, 949 |
| BsaJI | C|CNNGG | 56 |
| BsaWI | [AT]|CCGG[AT] | 930 |
| BsiHKAI | G[AT]GC[AT]|C | 221 |
| BsoBI | C|PyCGPuG | 256 |
| Bsp1286I | G[GAT]GC[CAT]|C | 221 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 195 |
| BsrGI | T|GTACA | 851 |
| BssKI | |CCNGG | 56, 874 |
| BssSI | C|TCGTG | 287 |
| BstBI | TT|CGAA | 393 |
| BstF5I | GGATGNN| | 105 |
| BstUI | CG|CG | 245, 301 |
| BstYI | Pu|GATCPy | 826, 871 |
| DdeI | C|TNAG | 223, 400, 979 |
| DpnI | GA-CH3|TC | 114, 403, 543, 825, 839, 870 |
| DpnII | |GATC | 114, 403, 543, 825, 839, 870 |
| EcoRI | G|AATTC | 384 |
| Fnu4HI | GC|NGC | 282 |
| HhaI | GCG|C | 244 |
| HinP1I | G|CGC | 244 |
| HincII | GTPy|PuAC | 498, 697, 919 |
| HindIII | A|AGCTT | 166 |
| HinfI | G|ANTC | 3, 132, 156, 791 |
| HpaI | GTT|AAC | 498, 697, 919 |
| HpaII | C|CGG | 56, 68, 873, 929 |
| Hpy188I | TCN|GA | 135, 224, 399, 743, 879, 913 |
| Hpy99I | CG[AT]CG| | 82, 172, 296, 318, 462, 502, 532, 584, 947 |
| HpyCH4III | ACN|GT | 557, 601, 647, 736, 832, 845 |
| HpyCH4IV | A|CGT | 297, 348, 491, 500, 585, 657, 693, 796, 807, 948 |
| MboI | |GATC | 114, 403, 543, 825, 839, 870 |
| MseI | T|TAA | 497, 696, 780, 918 |
| MspI | C|CGG | 56, 68, 873, 929 |
| MwoI | GCNNNNN|NNGC | 118, 251, 288 |
| NciI | CC|[CG]GG | 56, 874 |
| NlaIII | CATG| | 481 |
| NlaIV | GGN|NCC | 40, 195, 314, 716 |
| PflFI | GACN|NNGTC | 331, 370 |
| PsiI | TTA|TAA | 432 |
| RsaI | GT|AC | 24, 33, 850 |
| SacI | GAGCT|C | 221 |
| Sau3AI | |GATC | 114, 403, 543, 825, 839, 870 |
| ScaI | AGT|ACT | 25 |
| ScrFI | CC|NGG | 56, 874 |
| Taqƒ¿I | T|CGA | 5, 372, 392, 866 |
| TfiI | G|A[AT]TC | 3, 132, 156, 791 |
| Tsp45I | |GT[CG]AC | 325, 333, 805 |
| Tsp509I | |AATT | 338, 383 |
| TspRI | NNCA[CG]TGNN| | 558 |
| Tth111I | GACN|NNGTC | 331, 370 |
| XcmI | CCANNNNN|NNNNTGG | 214 |
Click here to view TAIR data
>AT1G13260.1 length:1035
ATGGAATCGA GTAGCGTTGA TGAGAGTACT ACAAGTACAG GTTCCATCTG | 50 |
TGAAACCCCG GCGATAACTC CGGCGAAAAA GTCGTCGGTA GGTAACTTAT | 100 |
ACAGGATGGG AAGCGGATCA AGCGTTGTGT TAGATTCAGA GAACGGCGTA | 150 |
GAAGCTGAAT CTAGGAAGCT TCCGTCGTCA AAATACAAAG GTGTGGTGCC | 200 |
ACAACCAAAC GGAAGATGGG GAGCTCAGAT TTACGAGAAA CACCAGCGCG | 250 |
TGTGGCTCGG GACATTCAAC GAAGAAGACG AAGCCGCTCG TGCCTACGAC | 300 |
GTCGCGGTTC ACAGGTTCCG TCGCCGTGAC GCCGTCACAA ATTTCAAAGA | 350 |
CGTGAAGATG GACGAAGACG AGGTCGATTT CTTGAATTCT CATTCGAAAT | 400 |
CTGAGATCGT TGATATGTTG AGGAAACATA CTTATAACGA AGAGTTAGAG | 450 |
CAGAGTAAAC GGCGTCGTAA TGGTAACGGA AACATGACTA GGACGTTGTT | 500 |
AACGTCGGGG TTGAGTAATG ATGGTGTTTC TACGACGGGG TTTAGATCGG | 550 |
CGGAGGCACT GTTTGAGAAA GCGGTAACGC CAAGCGACGT TGGGAAGCTA | 600 |
AACCGTTTGG TTATACCGAA ACATCACGCA GAGAAACATT TTCCGTTACC | 650 |
GTCAAGTAAC GTTTCCGTGA AAGGAGTGTT GTTGAACTTT GAGGACGTTA | 700 |
ACGGGAAAGT GTGGAGGTTC CGTTACTCGT ATTGGAACAG TAGTCAGAGT | 750 |
TATGTTTTGA CTAAAGGTTG GAGCAGGTTC GTTAAGGAGA AGAATCTACG | 800 |
TGCTGGTGAC GTGGTTAGTT TCAGTAGATC TAACGGTCAG GATCAACAGT | 850 |
TGTACATTGG GTGGAAGTCG AGATCCGGGT CAGATTTAGA TGCGGGTCGG | 900 |
GTTTTGAGAT TGTTCGGAGT TAACATTTCA CCGGAGAGTT CAAGAAACGA | 950 |
CGTCGTAGGA AACAAAAGAG TGAACGATAC TGAGATGTTA TCGTTGGTGT | 1000 |
GTAGCAAGAA GCAACGCATC TTTCACGCCT CGTAA | 1050 |
>AT1G13260.1 longest ORF length:344
MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV | 50 |
EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD | 100 |
VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE | 150 |
QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL | 200 |
NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS | 250 |
YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR | 300 |
VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS | 350 |