fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G13300 HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1)

>AT1G13300.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 301
HpaI GTT|AAC 660
KpnI GGTAC|C 786
NcoI C|CATGG 872
StyI C|C[AT][AT]GG 872


Click here to view TAIR data

>AT1G13300.1 length:1035
ATGATTAAAA AGTTCAGCAA TATGGATTAC AACCAGAAAC GAGAGAGATG 
50
TGGGCAATAC ATCGAAGCCC TCGAAGAGGA ACGTCGCAAG ATTCATGTAT 
100
TTCAACGTGA ACTTCCTCTT TGCTTAGACC TTGTAACTCA AGCGATCGAG 
150
GCATGTAAGA GGGAGTTACC GGAGATGACG ACGGAGAATA TGTACGGACA 
200
ACCAGAGTGC TCGGAGCAGA CGACCGGAGA ATGTGGGCCG GTCTTGGAGC 
250
AGTTTCTAAC TATTAAAGAT TCATCGACAT CCAACGAAGA AGAAGATGAA 
300
GAATTCGACG ATGAGCATGG AAATCACGAT CCAGACAATG ATTCCGAGGA 
350
CAAGAACACG AAATCTGATT GGCTTAAGTC TGTTCAACTC TGGAATCAAC 
400
CCGACCACCC ACTTCTTCCA AAAGAGGAAA GGTTGCAGCA GGAGACGATG 
450
ACAAGAGATG AGAGTATGAG AAAAGATCCG ATGGTGAACG GTGGCGAAGG 
500
GAGGAAGAGA GAGGCGGAGA AAGACGGAGG AGGAGGGAGA AAGCAAAGAA 
550
GGTGTTGGTC GTCGCAATTG CATAGACGCT TCTTGAACGC TCTTCAACAC 
600
TTAGGTGGAC CTCATGTAGC TACGCCAAAG CAAATCAGGG AGTTTATGAA 
650
GGTTGATGGG TTAACCAATG ATGAAGTTAA AAGCCATTTA CAGAAATATA 
700
GACTGCATAC AAGAAGGCCA CGCCAAACAG TCCCTAACAA CGGAAACTCT 
750
CAAACGCAAC ATTTCGTAGT CGTCGGTGGT TTATGGGTAC CACAATCGGA 
800
CTACTCTACG GGCAAGACTA CCGGAGGAGC CACCACCAGC AGTACCACCA 
850
CAACCACCGG CATCTATGGA ACCATGGCCG CACCGCCACC TCCACAATGG 
900
CCTAGCCATT CCAATTATAG ACCGTCGATT ATTGTGGACG AAGGATCGGG 
950
AAGTCATAGT GAAGGGGTCG TGGTCCGGTG TAGCTCGCCG GCGATGTCTT 
1000
CTTCTACCCG TAATCATTAC GTCAAGAATA ATTAA
1050

>AT1G13300.1 longest ORF length:344
MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE 
50
ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE 
100
EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM 
150
TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH 
200
LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS 
250
QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW 
300
PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
350