fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G13400 JGL, NUB NUBBIN, JAGGED-LIKE, C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT1G13400.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 27
PvuII CAG|CTG 412
XbaI T|CTAGA 55, 583


Click here to view TAIR data

>AT1G13400.1 length:624
ATGAGAGCTG ATGAAAATAA CACTTTAGAT CTTAATAACT TACCTGATGA 
50
TCCTTCTAGA GACATTTTCC CATTCTTTGA AGAAGGCTTC TCTTCATCTT 
100
CTTCTTCTGG AGGGTTTAGA GAGAAGCAAA CAAAAGATGG GAAAGAGTAT 
150
GAATGTAGAT TTTGTTCACT AAAGTTCTTC AAATCTCAAG CTCTCGGTGG 
200
CCACATGAAC CGCCACCGTC AAGAAAGAGA GACGGAGTCA CTAAACAAAG 
250
CTCGTGAACT TGTTCTTCGC AACGATAGCT TTCCTCCTCA TCAAGGACCT 
300
CCATCGTTTA GTTATCATCA AGGAGATGTG CATATAGGAG ACCTAACACA 
350
ATTTAAACCA ATGATGTACC CACCGAGACA TTTCTCACTC CCCGGCTCTT 
400
CCTCCATCCT CCAGCTGCAA CCACCATATC TTTATCCTCC GCTGTCTTCA 
450
CCGTTTCCTC AACATAACAC CAACATAGGC AACAACGGTA CGCGTCACCA 
500
AACCCTAACC AATAGCGTTT GCGGTGGTCG TGCACTACCT GACTCAAGTT 
550
ACACCTTCAT CGGTGCACCA GTGGCTAATG GTTCTAGAGT TGCTCCACAT 
600
CTACCTCCAC ATCATGGGCT ATAA
650

>AT1G13400.1 longest ORF length:207
MRADENNTLD LNNLPDDPSR DIFPFFEEGF SSSSSSGGFR EKQTKDGKEY 
50
ECRFCSLKFF KSQALGGHMN RHRQERETES LNKARELVLR NDSFPPHQGP 
100
PSFSYHQGDV HIGDLTQFKP MMYPPRHFSL PGSSSILQLQ PPYLYPPLSS 
150
PFPQHNTNIG NNGTRHQTLT NSVCGGRALP DSSYTFIGAP VANGSRVAPH 
200
LPPHHGL
250