fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G15720 TRFL5 TRF-like 5 (.1)

>AT1G15720.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HpaI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
EcoRI G|AATTC 1092
EcoRV GAT|ATC 145, 1084
HindIII A|AGCTT 214
KpnI GGTAC|C 169
NdeI CA|TATG 605
StyI C|C[AT][AT]GG 55
XbaI T|CTAGA 916
XhoI C|TCGAG 752


Click here to view TAIR data

>AT1G15720.1 length:1173
ATGGAAGTGA TGGACAAATG GGTAGCTGAA TTTTTCCTCC GACGCCAACT 
50
AAATCCTAGG GTTTACGCTT TTCCACTGTT ATCGGCTCTG AAACCAGTAG 
100
ATTCCGACGA CTGTGTAAAA CTCAAGCTAA CTGCTGTTTT GCGGGATATC 
150
TCCAATTCCA TGATTCAAGG TACCGTAGAC GAAGGAATGC TTGATCTCCT 
200
CGAAATTCTT GAGAAGCTTC TGTTACAGGA ACATTCGGTT ATCATGGGAT 
250
CTCTCAAATC TGCGTATTGC TGGACTGCTG TGGAATGCAC GCTTAGGTTT 
300
ATGTGGCCAG TGAATGCTTC GGATGGCTTC TTCGGTGATG CCCTTGAGAG 
350
GATTTGGAGG AATCGGATTG GGACATTGAA GGAGAAAGAG AGCGACTTGG 
400
TGACTCGTGA GTTGTTGAAA TGGGAGAGTG ATCTAAACAA GGCGTTTGAG 
450
GAACCTGAGA TTTACCAGAA GATTCGTGAG ACTAACATCA GGTACAATGC 
500
CATCTCTCAT CTTAATCAGC TTCTCAAAGA GCAGTGGGCA CTACTTGGAT 
550
GTTCTTCTCT TGAATCAGAA GCTCGAAAGA GGTTTCTTAA GCGTAAGGAT 
600
TCACCATATG CTTCCCGGAG AGGAGGTAAT AGAGAGAAAG CTAATGATGT 
650
TGAAGAAGTG GGTGGTGTGG AGAATCCTGA TGGGGTTGGT AAGGTGAATG 
700
AACATGAACA GGAACACGAG CCAAGTCTTA ATAAGGGGGA AATGTTGGTA 
750
GCTCGAGAGC TTAAGGATTT TTTGTTGGAG ATTCAAAGAC TCATCGACCC 
800
TATAACAAGG CAAGATCAAG AACCTAACAA TGCAATGGAG CATTCAGTTG 
850
ATGTCACTCC TCAGCCTGAT GGGGCAAATA GGACTGATGC AGAAGATAGT 
900
GAGGGAACAT CATCGTCTAG AAGAGTCAGG CCTCATCTAC CAACCCCGGA 
950
ACCTCTGAAT GTATCACCGT TGAAGAAAGG AAGATTAGAA AGACCGCGTC 
1000
CCAGAAGGCC AATGAAATTC TGGACTTCTG AAGAAGTGGC AGCTTTGAGG 
1050
GAAGGAGTTA AAGAATATGG AAAATCATGG AAAGATATCA AGAATTCATA 
1100
CCCTGTTGTT TTCGCTGATA GGAGCGAGGT GGATTTGAAG GATAAGTGGA 
1150
GGAATTTACT TGGTCGTCAG TAG
1200

>AT1G15720.1 longest ORF length:390
MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI 
50
SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF 
100
MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE 
150
EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD 
200
SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV 
250
ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS 
300
EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR 
350
EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ 
400