fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G16070 AtTLP8 tubby like protein 8 (.1.2)

>AT1G16070.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 1174
NdeI CA|TATG 702
SacI GAGCT|C 1017
SpeI A|CTAGT 325
StyI C|C[AT][AT]GG 1057


Click here to view TAIR data

>AT1G16070.1 length:1194
ATGGCTGGTT CGAGAAAAGT GAATGATTTG TTGGAGGAAA ATAAGGGAAA 
50
TGTGGACACA ATTACAGGGT CTTTATCCAC TCAAAAGGGA GAGGATAAGG 
100
AGAATGTGTC GCCGGAGAAA GTCTCTACCT CTGTGGAAAC TCGGAAACTA 
150
GATCGAGCTT TGAAGTCTCA ATCGATGAAG GGTAACTCTG GGTTTCCAAC 
200
GGAAGTTACA AATTTCAAAT CTTTCTCAAC TGGTGGTCGA ACAGCTCTGA 
250
AGCAGTCATC ACTGCAAGCG TGTATGCAGA AGAACAGTGA GGTTGATAAG 
300
AGTAGTTTCG GAATGAAAAC TTGGACTAGT GTTGATTCAG AGCATTCAAG 
350
TTCGTTGAAA GTGTGGGAGT TTTCGGATTC TGAAGCTGCC CCTGCTTCCT 
400
CTTGGTCTAC TTTGCCCAAC AGGGCTTTGT TGTGCAAGAC ACTACCTTTG 
450
GATGTGGGAA GATGCACTTG TCTGATTGTG AAAGAACAAT CACCTGAAGG 
500
CTTGAGCCAC GGATCTGTAT ATTCACTTTA TACACATGAA GGTCGGGGGC 
550
GTAAAGACCG GAAGTTAGCA GTTGCTTACC ATAGCCGACG TAATGGGAAA 
600
TCTATATTTA GGGTGGCACA GAATGTTAAG GGATTGCTGT GCAGTTCGGA 
650
TGAAAGTTAT GTCGGTTCCA TGACGGCTAA TCTCTTGGGT TCCAAGTACT 
700
ACATATGGGA CAAGGGAGTT CGAGTTGGTT CTGTAGGTAA AATGGTGAAG 
750
CCGCTTCTTT CGGTTGTAAT ATTCACACCC ACCATAACAA CTTGGACAGG 
800
GAGCTACAGA AGAATGAGAA CTTTGCTACC AAAGCAGCAG CCAATGCAGA 
850
AAAACAACAA TAAGCAGGTT CAACAAGCTA GTAAACTACC GCTTGATTGG 
900
CTTGAGAATA AGGAAAAAAT TCAGAAGCTA TGCTCAAGGA TACCACATTA 
950
CAACAAAATC TCCAAGCAGC ATGAGTTAGA CTTCAGAGAC AGAGGAAGAA 
1000
CAGGACTGAG AATACAGAGC TCGGTGAAGA ACTTTCAGCT AACACTCACG 
1050
GAGACTCCAA GGCAGACAAT TCTTCAAATG GGGAGAGTTG ACAAAGCAAG 
1100
ATATGTAATC GACTTCAGGT ATCCATTCTC AGGCTACCAA GCATTCTGCA 
1150
TTTGCTTGGC TTCTATTGAT TCCAAGCTTT GTTGTACTGT TTGA
1200

>AT1G16070.1 longest ORF length:397
MAGSRKVNDL LEENKGNVDT ITGSLSTQKG EDKENVSPEK VSTSVETRKL 
50
DRALKSQSMK GNSGFPTEVT NFKSFSTGGR TALKQSSLQA CMQKNSEVDK 
100
SSFGMKTWTS VDSEHSSSLK VWEFSDSEAA PASSWSTLPN RALLCKTLPL 
150
DVGRCTCLIV KEQSPEGLSH GSVYSLYTHE GRGRKDRKLA VAYHSRRNGK 
200
SIFRVAQNVK GLLCSSDESY VGSMTANLLG SKYYIWDKGV RVGSVGKMVK 
250
PLLSVVIFTP TITTWTGSYR RMRTLLPKQQ PMQKNNNKQV QQASKLPLDW 
300
LENKEKIQKL CSRIPHYNKI SKQHELDFRD RGRTGLRIQS SVKNFQLTLT 
350
ETPRQTILQM GRVDKARYVI DFRYPFSGYQ AFCICLASID SKLCCTV
400