fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G17380 TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1)

>AT1G17380.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 804
HpaI GTT|AAC 619
NcoI C|CATGG 734
PvuII CAG|CTG 292
StyI C|C[AT][AT]GG 734


Click here to view TAIR data

>AT1G17380.1 length:825
ATGTCGTCGA GCAATGAAAA TGCTAAGGCA CAAGCGCCGG AGAAATCTGA 
50
CTTTACCCGG AGATGTAGTT TGCTCAGCCG TTACTTGAAG GAGAAGGGTA 
100
GTTTCGGAAA CATTGATCTT GGCTTATACC GAAAACCCGA TTCCAGTCTC 
150
GCGTTGCCCG GAAAATTCGA TCCACCAGGG AAACAAAATG CGATGCATAA 
200
GGCAGGGCAT TCCAAAGGCG AACCCTCTAC CTCATCAGGA GGCAAAGTCA 
250
AAGATGTTGC TGACCTCAGT GAATCACAGC CAGGAAGTTC GCAGCTGACC 
300
ATATTCTTCG GAGGGAAAGT TTTAGTATAT AATGAGTTCC CCGTAGACAA 
350
AGCTAAAGAG ATTATGGAAG TAGCAAAACA AGCCAAGCCT GTGACTGAGA 
400
TTAACATTCA GACACCAATC AATGACGAAA ACAACAACAA CAAGAGCAGC 
450
ATGGTTCTTC CTGATCTCAA TGAGCCTACT GATAATAATC ACCTAACAAA 
500
GGAACAACAA CAGCAACAAG AACAAAATCA GATCGTGGAA CGTATAGCAC 
550
GTAGAGCTTC CCTCCATCGA TTCTTTGCTA AACGGAAAGA CAGAGCTGTG 
600
GCTAGGGCTC CGTACCAAGT TAACCAAAAC GCAGGTCATC ATCGTTATCC 
650
TCCCAAGCCA GAGATTGTAA CCGGTCAACC ACTAGAGGCA GGACAGTCGT 
700
CACAAAGACC GCCGGATAAC GCCATTGGTC AAACCATGGC CCATATCAAA 
750
TCAGACGGTG ATAAAGATGA TATTATGAAG ATTGAAGAAG GCCAAAGTTC 
800
GAAAGATCTC GATCTAAGGC TATAG
850

>AT1G17380.1 longest ORF length:274
MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL 
50
ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT 
100
IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS 
150
MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV 
200
ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK 
250
SDGDKDDIMK IEEGQSSKDL DLRL
300