Locus |
Common name |
Short description |
AT1G17380 |
TIFY11A, JAZ5 |
jasmonate-zim-domain protein 5 (.1) |
>AT1G17380.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BglII
| A|GATCT |
804 |
HpaI
| GTT|AAC |
619 |
NcoI
| C|CATGG |
734 |
PvuII
| CAG|CTG |
292 |
StyI
| C|C[AT][AT]GG |
734 |
Click here to view TAIR data
>AT1G17380.1 length:825
ATGTCGTCGA GCAATGAAAA TGCTAAGGCA CAAGCGCCGG AGAAATCTGA | 50 |
CTTTACCCGG AGATGTAGTT TGCTCAGCCG TTACTTGAAG GAGAAGGGTA | 100 |
GTTTCGGAAA CATTGATCTT GGCTTATACC GAAAACCCGA TTCCAGTCTC | 150 |
GCGTTGCCCG GAAAATTCGA TCCACCAGGG AAACAAAATG CGATGCATAA | 200 |
GGCAGGGCAT TCCAAAGGCG AACCCTCTAC CTCATCAGGA GGCAAAGTCA | 250 |
AAGATGTTGC TGACCTCAGT GAATCACAGC CAGGAAGTTC GCAGCTGACC | 300 |
ATATTCTTCG GAGGGAAAGT TTTAGTATAT AATGAGTTCC CCGTAGACAA | 350 |
AGCTAAAGAG ATTATGGAAG TAGCAAAACA AGCCAAGCCT GTGACTGAGA | 400 |
TTAACATTCA GACACCAATC AATGACGAAA ACAACAACAA CAAGAGCAGC | 450 |
ATGGTTCTTC CTGATCTCAA TGAGCCTACT GATAATAATC ACCTAACAAA | 500 |
GGAACAACAA CAGCAACAAG AACAAAATCA GATCGTGGAA CGTATAGCAC | 550 |
GTAGAGCTTC CCTCCATCGA TTCTTTGCTA AACGGAAAGA CAGAGCTGTG | 600 |
GCTAGGGCTC CGTACCAAGT TAACCAAAAC GCAGGTCATC ATCGTTATCC | 650 |
TCCCAAGCCA GAGATTGTAA CCGGTCAACC ACTAGAGGCA GGACAGTCGT | 700 |
CACAAAGACC GCCGGATAAC GCCATTGGTC AAACCATGGC CCATATCAAA | 750 |
TCAGACGGTG ATAAAGATGA TATTATGAAG ATTGAAGAAG GCCAAAGTTC | 800 |
GAAAGATCTC GATCTAAGGC TATAG | 850 |
>AT1G17380.1 longest ORF length:274
MSSSNENAKA QAPEKSDFTR RCSLLSRYLK EKGSFGNIDL GLYRKPDSSL | 50 |
ALPGKFDPPG KQNAMHKAGH SKGEPSTSSG GKVKDVADLS ESQPGSSQLT | 100 |
IFFGGKVLVY NEFPVDKAKE IMEVAKQAKP VTEINIQTPI NDENNNNKSS | 150 |
MVLPDLNEPT DNNHLTKEQQ QQQEQNQIVE RIARRASLHR FFAKRKDRAV | 200 |
ARAPYQVNQN AGHHRYPPKP EIVTGQPLEA GQSSQRPPDN AIGQTMAHIK | 250 |
SDGDKDDIMK IEEGQSSKDL DLRL | 300 |
|