fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G17460 TRFL3 TRF-like 3 (.1.2)

>AT1G17460.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, StyI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 1139
HindIII A|AGCTT 109, 612, 1480, 1570
PstI CTGCA|G 274, 314, 469
SacI GAGCT|C 1402
SpeI A|CTAGT 1518
XbaI T|CTAGA 592, 1321


Click here to view TAIR data

>AT1G17460.1 length:1815
ATGTTTGGAA ATGTGAAAGA CTATGGAGAG ACGTTTCAAG ACAGTATTTT 
50
TCAGACAAGA AACGGATCAC TTTCCTCAAC AAATCAAATT GGAAACCCTG 
100
TTACGTACAA GCTTGTGCGG GTTGCAGGCG ACGGGAGTCT AGTTCCTGCA 
150
ACTGATGAAG AGATGTTGGA GGTCAAGAAT TTGCTTGAGA AAAACGAGCA 
200
AGATATGCCT GTTTTACCAG ATCCTATACA AACTGAGGAA TACATTCCCG 
250
ATGAAGGTTC ACCTTCTCAG TTTCTGCAGC TAGAAAATTT TGAAGGCTTC 
300
TTTCAGTCGG AAACTGCAGG ACCGTATACA GAAAATTTGA ACTCTCGACA 
350
TGAGTCTAAA GAGGAATTGA TGAATGGATC TCAGATGCTT TTTGTTCTTC 
400
CGGATACCAA ATTTCAGATT TCTACTGAGC TGTCTGGGAA TGTGGAGCTA 
450
GTCCCATCCA AAGTTTTGCT GCAGGAACCA ATTCTTTTTT CATCAAATGG 
500
ATGCAGTATT AATCAATCTA CGGATGTCTT AAATGCTACA GCTAGTCCTA 
550
AAGAACCTGC ATTGTCAACT GCTGCCTCAA AACCTGATTT TTCTAGAGTA 
600
CCAGGCGAGA TAAGCTTGGC TAATCTTTCA ATTAAAGAAT TACAAGAAAC 
650
TTTCAGAGCC ACGTTTGGTC GTGAAACTAC TTCTAAGGAC AAACGATGGC 
700
TCAAAAGAAG AATCAAAATG GGACTGATTA ATTCATGTGT AGTTCCAACA 
750
ACTACCCTGA CAATTAATGA TAGCAAACTG ATTGGTGGAG ATCAAGATGC 
800
AATTGATGCT TTTAGCAAGG GTACAGTAGA TGAAGAAACA GCTACTGAAA 
850
GCATAGATAC ACCAGCTAGT CCTGACGGCA TAAAGGGGCA TTCAAATGAT 
900
TTTGGGCATA GTCCTGTTGA AACTTTTGTG GACCATTATT CTGGAAACGA 
950
AGATTTTGAA GGTGAAGATG GGTCTGCAAA AAGAGTGAGG AAGCCTACAA 
1000
GGAGATATAT TGAAGAAACC AATGAAAAAC AACAAATTGA CGGGTCAATG 
1050
ATCCCTTCAA AAGATCCAAG CTCTATTCAA GCCGTTTCTT CAGAAGGGAG 
1100
AGTTGTTGTC ACCAGGATGG TATCCCTTGC TGGTTCCAGA ATTCAGGTTC 
1150
CCTATGTTTC TCATGTAAGG AGAAGTCGTC CAAGAGAAAA CATAATGGCT 
1200
CTTGGGGAAT TTCGTTCTAA GTCATGGGAG GTGAAAGCTG CTCCAGAGGA 
1250
GGGTAACCTG AATCTAAGCC CACCTCAGTT GAGCAATGAT GTGAACCGAG 
1300
TTCCAGGTGT CAAATCTGCA TCTAGATGTG TCCAGAAAGA AAGTGACAAA 
1350
GACCATTTAA AACCAATTTT CACTGATGTG GATCAAGAGA TGATGGAGCC 
1400
AGAGCTCTTA GACTCATCTG GAGATAGCTC AGATGATAAT TTCGTTGATG 
1450
CACCAATCAC GCAAAGTGCA AGTGGAAGGA AGCTTCATCG AGCTTGGACT 
1500
ATCTCTGAAG TTGAAAAACT AGTCGAAGGT GTGTCCAAAT ATGGAGTAGG 
1550
GAAATGGACT GAGATCAAAA AGCTTTCATT TTCACCATAC ACGCATCGTA 
1600
CCACTGTGGA TCTCAAGGAC AAATGGCGAA ATCTACAAAA AGCAAGTTCT 
1650
TCAAACAGAA TGGAAGGAGG TCTGAAGAAA CACGGGTCGA TGGCCATTCC 
1700
TACTCACATT ATGTTGCAGG TAAGAGAGCT TGCTCAAAAA CAATCACCGA 
1750
TTTCACGTGT AGTGAGCAAG GCTAGAGTGG TGAAGAGATC GAGATCAAGA 
1800
AACGGTTTCT TGTAG
1850

>AT1G17460.1 longest ORF length:604
MFGNVKDYGE TFQDSIFQTR NGSLSSTNQI GNPVTYKLVR VAGDGSLVPA 
50
TDEEMLEVKN LLEKNEQDMP VLPDPIQTEE YIPDEGSPSQ FLQLENFEGF 
100
FQSETAGPYT ENLNSRHESK EELMNGSQML FVLPDTKFQI STELSGNVEL 
150
VPSKVLLQEP ILFSSNGCSI NQSTDVLNAT ASPKEPALST AASKPDFSRV 
200
PGEISLANLS IKELQETFRA TFGRETTSKD KRWLKRRIKM GLINSCVVPT 
250
TTLTINDSKL IGGDQDAIDA FSKGTVDEET ATESIDTPAS PDGIKGHSND 
300
FGHSPVETFV DHYSGNEDFE GEDGSAKRVR KPTRRYIEET NEKQQIDGSM 
350
IPSKDPSSIQ AVSSEGRVVV TRMVSLAGSR IQVPYVSHVR RSRPRENIMA 
400
LGEFRSKSWE VKAAPEEGNL NLSPPQLSND VNRVPGVKSA SRCVQKESDK 
450
DHLKPIFTDV DQEMMEPELL DSSGDSSDDN FVDAPITQSA SGRKLHRAWT 
500
ISEVEKLVEG VSKYGVGKWT EIKKLSFSPY THRTTVDLKD KWRNLQKASS 
550
SNRMEGGLKK HGSMAIPTHI MLQVRELAQK QSPISRVVSK ARVVKRSRSR 
600
NGFL
650