fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G17590 NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4)

>AT1G17590.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 882
HindIII A|AGCTT 694
StyI C|C[AT][AT]GG 380
XhoI C|TCGAG 479


Click here to view TAIR data

>AT1G17590.1 length:987
ATGGATAAGA AAGTTTCATT TACTAGCTCT GTGGCACATT CAACTCCACC 
50
ATACCTTAGT ACTTCCATCT CATGGGGACT TCCAACCAAA TCCAATGGTG 
100
TGACTGAATC ACTGAGTTTG AAGGTGGTAG ATGCAAGACC AGAACGTCTT 
150
ATAAACACAA AGAATATCAG TTTCCAGGAC CAGGATTCAT CTTCAACTCT 
200
GTCCTCTGCT CAATCTTCTA ACGATGTTAC AAGTAGTGGA GATGATAACC 
250
CCTCAAGACA AATCTCATTT TTAGCACATT CAGATGTTTG TAAAGGATTT 
300
GAAGAAACTC AAAGGAAGCG ATTTGCAATT AAATCAGGCT CCTCCACGGC 
350
AGGAATCGCT GATATTCACT CTTCTCCTTC CAAGGCTAAC TTCTCATTTC 
400
ACTATGCCGA TCCACATTTT GGTGGTTTAA TGCCTGCGGC TTACCTACCA 
450
CAGGCAACAA TATGGAATCC CCAAATGACT CGAGTTCCGC TACCATTCGA 
500
TCTCATAGAG AATGAGCCTG TCTTTGTCAA TGCAAAGCAA TTCCATGCAA 
550
TTATGAGGAG GAGGCAACAG CGTGCTAAGC TAGAGGCGCA AAACAAACTA 
600
ATCAAAGCCC GTAAGCCGTA TCTTCATGAA TCTCGACATG TTCACGCTCT 
650
TAAACGACCT AGAGGATCTG GTGGAAGATT CCTAAACACC AAAAAGCTTC 
700
AAGAATCTAC AGATCCAAAA CAAGACATGC CAATCCAACA GCAACACGCA 
750
ACGGGAAACA TGTCAAGATT TGTGCTTTAT CAGTTGCAGA ACAGCAATGA 
800
CTGTGATTGT TCAACCACTT CTCGCTCTGA CATCACATCT GCTTCTGACA 
850
GCGTTAATCT CTTTGGACAC TCTGAATTTC TGATATCAGA TTGCCCATCT 
900
CAGACAAACC CAACAATGTA TGTTCATGGT CAATCAAATG ACATGCATGG 
950
AGGTAGGAAC ACACACCATT TCTCTGTCCA TATCTGA
1000

>AT1G17590.1 longest ORF length:328
MDKKVSFTSS VAHSTPPYLS TSISWGLPTK SNGVTESLSL KVVDARPERL 
50
INTKNISFQD QDSSSTLSSA QSSNDVTSSG DDNPSRQISF LAHSDVCKGF 
100
EETQRKRFAI KSGSSTAGIA DIHSSPSKAN FSFHYADPHF GGLMPAAYLP 
150
QATIWNPQMT RVPLPFDLIE NEPVFVNAKQ FHAIMRRRQQ RAKLEAQNKL 
200
IKARKPYLHE SRHVHALKRP RGSGGRFLNT KKLQESTDPK QDMPIQQQHA 
250
TGNMSRFVLY QLQNSNDCDC STTSRSDITS ASDSVNLFGH SEFLISDCPS 
300
QTNPTMYVHG QSNDMHGGRN THHFSVHI
350