fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G17950 AtMYB52, BW52, MYB52 myb domain protein 52 (.1)

>AT1G17950.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 153, 218
EcoRI G|AATTC 674
NcoI C|CATGG 222
PstI CTGCA|G 29
StyI C|C[AT][AT]GG 157, 222, 348


Click here to view TAIR data

>AT1G17950.1 length:750
ATGATGTGTA GTCGAGGCCA TTGGAGACCT GCAGAAGACG AGAAGCTAAG 
50
AGAACTCGTC GAACAATTTG GTCCTCATAA TTGGAACGCC ATAGCTCAGA 
100
AGCTCTCTGG TCGATCTGGT AAGAGTTGTA GATTGAGATG GTTTAATCAA 
150
TTGGATCCTA GGATTAACCG AAACCCTTTC ACGGAGGAAG AAGAAGAAAG 
200
GCTTTTAGCG TCTCATCGGA TCCATGGGAA CAGATGGTCT GTGATCGCTA 
250
GATTTTTTCC CGGTCGAACT GATAACGCTG TTAAAAACCA TTGGCACGTC 
300
ATCATGGCTC GTCGTGGCCG AGAACGGTCC AAGCTCCGTC CACGAGGCCT 
350
TGGCCATGAT GGCACGGTGG CTGCGACTGG GATGATTGGT AATTATAAAG 
400
ACTGCGATAA GGAGAGAAGA TTGGCAACCA CAACCGCTAT CAATTTTCCT 
450
TATCAATTCT CTCATATTAA TCATTTTCAA GTCCTCAAAG AGTTCTTGAC 
500
CGGAAAGATC GGGTTCAGAA ATAGTACTAC TCCAATACAA GAAGGAGCAA 
550
TAGACCAAAC TAAACGACCG ATGGAGTTCT ACAATTTTCT TCAAGTAAAC 
600
ACGGATTCGA AGATACACGA ATTGATAGAT AATTCAAGAA AAGACGAAGA 
650
AGAAGATGTC GATCAAAACA ACCGAATTCC TAACGAGAAT TGTGTTCCAT 
700
TTTTCGACTT TTTGTCTGTT GGAAACTCTG CCTCTCAGGG TTTATGTTAA 
750

>AT1G17950.1 longest ORF length:249
MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ 
50
LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV 
100
IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP 
150
YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN 
200
TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
250