fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G18330 RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)

>AT1G18330.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 670
AciI C|CGC 3, 246, 344
AclI AA|CGTT 106, 792
AflIII A|CPuPyGT 727
AluI AG|CT 187, 195, 301, 433, 890, 997
ApoI Pu|AATTPy 426
AseI AT|TAAT 73
BfaI C|TAG 755, 1036
BsaAI PyAC|GTPu 1028
BsaBI GATNN|NNATC 340, 710, 960
BsaHI GPu|CGPyC 215
BsaJI C|CNNGG 385
BsiHKAI G[AT]GC[AT]|C 1025
BslI CCNNNNN|NNGG 671
Bsp1286I G[GAT]GC[CAT]|C 1025
BsrDI GCAATGNN| 37
BsrFI Pu|CCGGPy 369
BsrGI T|GTACA 252
BsrI ACTGGN| 802
BstF5I GGATGNN| 753
BstUI CG|CG 670
BstXI CCANNNNN|NTGG 546
BstYI Pu|GATCPy 910
Cfr10I [AG]|CCGG[TC] 369
DdeI C|TNAG 7, 27, 139, 295, 409, 464, 746, 838, 896
DpnI GA-CH3|TC 11, 321, 340, 491, 710, 909
DpnII |GATC 11, 321, 340, 491, 710, 909
EaeI Py|GGCCPu 2
Fnu4HI GC|NGC 3, 31
HaeIII GG|CC 1, 942
HincII GTPy|PuAC 760
HindIII A|AGCTT 196
HinfI G|ANTC 609, 678, 737
HpaII C|CGG 368
Hpy188I TCN|GA 386, 486, 612, 837, 963, 1002
HpyCH4III ACN|GT 125, 132, 307, 884
HpyCH4IV A|CGT 105, 725, 791, 1027
HpyCH4V TG|CA 53, 550, 811, 856, 928
MboI |GATC 11, 321, 340, 491, 710, 909
MseI T|TAA 72, 327, 714, 887
MslI CAPyNN|NNPuTG 1032
MspA1I C[AC]G|C[GT]G 5, 248
MspI C|CGG 368
MwoI GCNNNNN|NNGC 300
NlaIII CATG| 170, 266, 876
NlaIV GGN|NCC 448
NsiI ATGCA|T 812
RsaI GT|AC 127, 237, 251, 525, 798
Sau3AI |GATC 11, 321, 340, 491, 710, 909
Taqƒ¿I T|CGA 13
TfiI G|A[AT]TC 609, 678, 737
TseI G|C[AT]GC 31
Tsp45I |GT[CG]AC 532
Tsp509I |AATT 56, 70, 425, 518, 767
TspRI NNCA[CG]TGNN| 468, 532


Click here to view TAIR data

>AT1G18330.1 length:1041
ATGGCCGCTG AGGATCGAAG TGAGGAACTA AGCAGCAATG TAGAAAATGG 
50
AAGTTGCAAT TCCAATGAAG GAATTAATCC TGAAACCAGC AGTCATTGGA 
100
TTGAAAACGT TGTCAAGGTT AGGAAACCGT ACACAGTAAC TAAGCAGAGA 
150
GAGAAGTGGA GTGAGGAAGA GCATGATAGG TTTCTTGAAG CTATCAAGCT 
200
TTATGGTCGT GGTTGGCGTC AAATCCAAGA ACACATAGGT ACAAAAACCG 
250
CTGTACAGAT ACGAAGCCAT GCTCAAAAGT TCTTCTCCAA GATGGCTCAG 
300
GAAGCTGACA GTAGAAGTGA AGGATCGGTT AAAGCGATTG TGATCCCGCC 
350
TCCTCGTCCA AAGAGAAAAC CGGCACATCC TTATCCTCGG AAATCGCCTG 
400
TTCCATATAC TCAGTCTCCT CCACCAAATT TGTCAGCTAT GGAGAAAGGA 
450
ACCAAGTCTC CAACCTCAGT GTTATCATCG TTTGGTTCAG AGGATCAAGT 
500
CAATAGATGC TCTTCGCCTA ATTCGTGTAC CAGTGACATC CAATCCATTG 
550
GTGCAACTTC CATTGATAAA AAGAATAACT ACACAACATC CAAGCAACCT 
600
TTCAAAGATG ATTCTGACAT TGGTTCAACA CCCATTTCAA GCATTACTCT 
650
TTTCGGGAAG ATTGTCCTTG TCGCGGAAGA ATCTCACAAA CCATCCTCTT 
700
ACAATGATGA TGATCTTAAA CAAATGACGT GTCAGGAGAA TCACTACTCA 
750
GGGATGCTAG TTGACACTAA TTTATCTCTT GGTGTATGGG AAACGTTTTG 
800
TACTGGTTCT AATGCATTTG GCTCGGTTAC AGAAGCATCT GAGAACTTGG 
850
AGAAAAGTGC AGAGCCGATA AGTTCTTCAT GGAAACGGTT AAGCTCCTTA 
900
GAAAAACAAG GATCTTGTAA TCCTGTAAAT GCAAGTGGGT TCAGGCCATA 
950
CAAGAGATGC CTATCAGAAA GAGAAGTAAC ATCATCATTG ACGCTGGTAG 
1000
CTTCAGATGA AAAGAAAAGC CAAAGAGCAC GTATATGCTA G
1050

>AT1G18330.1 longest ORF length:346
MAAEDRSEEL SSNVENGSCN SNEGINPETS SHWIENVVKV RKPYTVTKQR 
50
EKWSEEEHDR FLEAIKLYGR GWRQIQEHIG TKTAVQIRSH AQKFFSKMAQ 
100
EADSRSEGSV KAIVIPPPRP KRKPAHPYPR KSPVPYTQSP PPNLSAMEKG 
150
TKSPTSVLSS FGSEDQVNRC SSPNSCTSDI QSIGATSIDK KNNYTTSKQP 
200
FKDDSDIGST PISSITLFGK IVLVAEESHK PSSYNDDDLK QMTCQENHYS 
250
GMLVDTNLSL GVWETFCTGS NAFGSVTEAS ENLEKSAEPI SSSWKRLSSL 
300
EKQGSCNPVN ASGFRPYKRC LSEREVTSSL TLVASDEKKS QRARIC
350