fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G18330 RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)

>AT1G18330.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 748
AciI C|CGC 81, 324, 422
AclI AA|CGTT 184, 870
AflIII A|CPuPyGT 805
AluI AG|CT 265, 273, 379, 511, 968, 1075
ApoI Pu|AATTPy 504
AseI AT|TAAT 151
BfaI C|TAG 833, 1114
BsaAI PyAC|GTPu 1106
BsaBI GATNN|NNATC 418, 788, 1038
BsaHI GPu|CGPyC 293
BsaJI C|CNNGG 463
BsiHKAI G[AT]GC[AT]|C 1103
BslI CCNNNNN|NNGG 749
Bsp1286I G[GAT]GC[CAT]|C 1103
BsrDI GCAATGNN| 115
BsrFI Pu|CCGGPy 447
BsrGI T|GTACA 330
BsrI ACTGGN| 880
BstF5I GGATGNN| 831
BstUI CG|CG 748
BstXI CCANNNNN|NTGG 624
BstYI Pu|GATCPy 988
Cfr10I [AG]|CCGG[TC] 447
DdeI C|TNAG 85, 105, 217, 373, 487, 542, 824, 916, 974
DpnI GA-CH3|TC 89, 399, 418, 569, 788, 987
DpnII |GATC 89, 399, 418, 569, 788, 987
EaeI Py|GGCCPu 80
Fnu4HI GC|NGC 48, 81, 109
HaeIII GG|CC 79, 1020
HincII GTPy|PuAC 838
HindIII A|AGCTT 274
HinfI G|ANTC 687, 756, 815
HpaII C|CGG 446
Hpy188I TCN|GA 64, 464, 564, 690, 915, 1041, 1080
HpyCH4III ACN|GT 203, 210, 385, 962
HpyCH4IV A|CGT 183, 803, 869, 1105
HpyCH4V TG|CA 46, 131, 628, 889, 934, 1006
MboI |GATC 89, 399, 418, 569, 788, 987
MseI T|TAA 74, 150, 405, 792, 965
MslI CAPyNN|NNPuTG 1110
MspA1I C[AC]G|C[GT]G 83, 326
MspI C|CGG 446
MwoI GCNNNNN|NNGC 378
NlaIII CATG| 248, 344, 954
NlaIV GGN|NCC 526
NsiI ATGCA|T 890
RsaI GT|AC 205, 315, 329, 603, 876
Sau3AI |GATC 89, 399, 418, 569, 788, 987
Taqƒ¿I T|CGA 91
TfiI G|A[AT]TC 687, 756, 815
TseI G|C[AT]GC 48, 109
Tsp45I |GT[CG]AC 610
Tsp509I |AATT 37, 134, 148, 503, 596, 845
TspRI NNCA[CG]TGNN| 546, 610


Click here to view TAIR data

>AT1G18330.2 length:1119
ATGCTCTGTT TTGTTCGCTT TCAGGCTGGT TTTGTGAGAA TTATAGTTGC 
50
AGCAAGAAAG CGTTTCAGAT ATTTTTTAAT GGCCGCTGAG GATCGAAGTG 
100
AGGAACTAAG CAGCAATGTA GAAAATGGAA GTTGCAATTC CAATGAAGGA 
150
ATTAATCCTG AAACCAGCAG TCATTGGATT GAAAACGTTG TCAAGGTTAG 
200
GAAACCGTAC ACAGTAACTA AGCAGAGAGA GAAGTGGAGT GAGGAAGAGC 
250
ATGATAGGTT TCTTGAAGCT ATCAAGCTTT ATGGTCGTGG TTGGCGTCAA 
300
ATCCAAGAAC ACATAGGTAC AAAAACCGCT GTACAGATAC GAAGCCATGC 
350
TCAAAAGTTC TTCTCCAAGA TGGCTCAGGA AGCTGACAGT AGAAGTGAAG 
400
GATCGGTTAA AGCGATTGTG ATCCCGCCTC CTCGTCCAAA GAGAAAACCG 
450
GCACATCCTT ATCCTCGGAA ATCGCCTGTT CCATATACTC AGTCTCCTCC 
500
ACCAAATTTG TCAGCTATGG AGAAAGGAAC CAAGTCTCCA ACCTCAGTGT 
550
TATCATCGTT TGGTTCAGAG GATCAAGTCA ATAGATGCTC TTCGCCTAAT 
600
TCGTGTACCA GTGACATCCA ATCCATTGGT GCAACTTCCA TTGATAAAAA 
650
GAATAACTAC ACAACATCCA AGCAACCTTT CAAAGATGAT TCTGACATTG 
700
GTTCAACACC CATTTCAAGC ATTACTCTTT TCGGGAAGAT TGTCCTTGTC 
750
GCGGAAGAAT CTCACAAACC ATCCTCTTAC AATGATGATG ATCTTAAACA 
800
AATGACGTGT CAGGAGAATC ACTACTCAGG GATGCTAGTT GACACTAATT 
850
TATCTCTTGG TGTATGGGAA ACGTTTTGTA CTGGTTCTAA TGCATTTGGC 
900
TCGGTTACAG AAGCATCTGA GAACTTGGAG AAAAGTGCAG AGCCGATAAG 
950
TTCTTCATGG AAACGGTTAA GCTCCTTAGA AAAACAAGGA TCTTGTAATC 
1000
CTGTAAATGC AAGTGGGTTC AGGCCATACA AGAGATGCCT ATCAGAAAGA 
1050
GAAGTAACAT CATCATTGAC GCTGGTAGCT TCAGATGAAA AGAAAAGCCA 
1100
AAGAGCACGT ATATGCTAG
1150

>AT1G18330.2 longest ORF length:372
MLCFVRFQAG FVRIIVAARK RFRYFLMAAE DRSEELSSNV ENGSCNSNEG 
50
INPETSSHWI ENVVKVRKPY TVTKQREKWS EEEHDRFLEA IKLYGRGWRQ 
100
IQEHIGTKTA VQIRSHAQKF FSKMAQEADS RSEGSVKAIV IPPPRPKRKP 
150
AHPYPRKSPV PYTQSPPPNL SAMEKGTKSP TSVLSSFGSE DQVNRCSSPN 
200
SCTSDIQSIG ATSIDKKNNY TTSKQPFKDD SDIGSTPISS ITLFGKIVLV 
250
AEESHKPSSY NDDDLKQMTC QENHYSGMLV DTNLSLGVWE TFCTGSNAFG 
300
SVTEASENLE KSAEPISSSW KRLSSLEKQG SCNPVNASGF RPYKRCLSER 
350
EVTSSLTLVA SDEKKSQRAR IC
400