fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G18960 myb-like HTH transcriptional regulator family protein (.1)

>AT1G18960.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 7, 204, 504
EcoRI G|AATTC 654
HindIII A|AGCTT 532
HpaI GTT|AAC 664
StyI C|C[AT][AT]GG 34


Click here to view TAIR data

>AT1G18960.1 length:924
ATGGTGAGAT CTTGTTCTTC AAAATCAAAG AATCCTTGGA CAAACGAAGA 
50
AGACACAACC CAAAAGTTTG TGTTTGCGTC TGCGTCCAAA AACGGATGTG 
100
CAGCTCCTAA GAAAATAGGA CTTAGGAGAT GTGGAAAGAG TTGCAGAGTG 
150
AGAAAGACTG ATCATTCAGG AACCAAACAT GAGAGCTTCA CTTCTGAAGA 
200
CGAAGATCTG ATCATCAAGA TGCACGCAGC AATGGGAAGC AGATGGCAAC 
250
TTATTGCACA ACATTTACCA GGAAAGACAG AAGAAGAAGT GAAGATGTTT 
300
TGGAACACAA AACTGAAGAA GAAACTGTCG GAAATGGGGA TAGATCATGT 
350
CACTCACCGT CCCTTTTCTC ACGTACTTGC TGAATACGGC AACATCAATG 
400
GTGGTGGAAA CCTAAACCCT AATCCCTCGA ACCAAGCCGG ATCTCTTGGA 
450
CGCAATCACT CGCTCAATGA TGATGGTCAT CAACAACAAC CTAATGATTC 
500
AGGAGATCTC ATGTTTCATT TACAAGCAAT CAAGCTTATG ACAGATTCAT 
550
CGAACCAAGT CAAGCCTGAG TCTACGTTTG TGTACGCCTC TTCGTCTTCT 
600
TCTAACTCGT CTCCTCCATT GTTCTCTTCA ACTTGTTCTA CCATAGCTCA 
650
GGAGAATTCA GAGGTTAACT TCACTTGGTC TGACTTCCTT CTTGACCAAG 
700
AAACCTTCCA TGAAAACCAA CAGAATCATC CTCAAGAACT AGACAGCTTG 
750
TTTGGGAACG ACTTCTCCGA GGTAACAGCA GCTACAATGG CTAACACATC 
800
AACCGTACCA TCTCAGATCG AAGAAGAATC TTTGAGCAAT GGGTTCGTTG 
850
AATCGATTAT CGCTAAAGAA AAGGAGTTTT TCTTGGGATT TCCGAGCTAT 
900
CTGGAACAAC CTTTCCACTT TTAG
950

>AT1G18960.1 longest ORF length:307
MVRSCSSKSK NPWTNEEDTT QKFVFASASK NGCAAPKKIG LRRCGKSCRV 
50
RKTDHSGTKH ESFTSEDEDL IIKMHAAMGS RWQLIAQHLP GKTEEEVKMF 
100
WNTKLKKKLS EMGIDHVTHR PFSHVLAEYG NINGGGNLNP NPSNQAGSLG 
150
RNHSLNDDGH QQQPNDSGDL MFHLQAIKLM TDSSNQVKPE STFVYASSSS 
200
SNSSPPLFSS TCSTIAQENS EVNFTWSDFL LDQETFHENQ QNHPQELDSL 
250
FGNDFSEVTA ATMANTSTVP SQIEEESLSN GFVESIIAKE KEFFLGFPSY 
300
LEQPFHF
350