fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G19000 Homeodomain-like superfamily protein (.1.2)

>AT1G19000.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 478
EcoRV GAT|ATC 493
HindIII A|AGCTT 810
NcoI C|CATGG 307, 524
StyI C|C[AT][AT]GG 307, 524


Click here to view TAIR data

>AT1G19000.1 length:858
ATGGCCGCCG TTAGTAGTTC GTCGGAGACC GGAGACTGCG GCGTTACGGG 
50
AAAGAGAGAT GAGATCATGT TGTTCGGAGT TAGAGTCGTG GTTGATCCGA 
100
TGAGAAAGTG TGTGAGTTTG AACAATCTCT CTGATTATGA AAAGTCTTCT 
150
CCGGAGGATG AGATCCCTAA GATAGTCACC GCCGGAGCTG GAGATGGTGA 
200
AGATAAGAAC GAAACGGATG CGACGGTGAT TGTCGCTGAC GGTTACGCCT 
250
CCGCCAATGA CGCTGTCCAG ATTTCGTCTT CTTCCGGCGG GAGGAAACGA 
300
GGGGTTCCAT GGACAGAGAA CGAGCATAAG AGGTTCTTGA TTGGGTTGCA 
350
GAAAGTAGGA AAAGGAGATT GGAAAGGAAT ATCAAGAAAC TTTGTGAAGA 
400
GTAGGACTCC TACTCAAGTA GCTAGTCATG CTCAGAAATA CTTCCTCCGA 
450
CGAACCAACC TCAACCGTCG CCGAAGAAGA TCTAGCCTTT TTGATATCAC 
500
TACTGAGACG GTTACAGAAA TGGCCATGGA GCAAGATCCT ACTCAGGAGA 
550
ACTCACCACT ACCTGAAACC AACATCAGCT CTGGACAGCA AGCGATGCAA 
600
GTTTTTACTG ACGTGCCGAC AAAAACTGAG AATGCACCAG AGACATTTCA 
650
TCTCAACGAT CCATATCTGG TTCCAGTAAC CTTCCAAGCA AAGCCAACAT 
700
TCAATCTAAA CACAGATGCT GCTCCACTTT CTCTCAACCT TTGTCTGGCA 
750
TCCTCATTTA ATCTTAACGA GCAACCCAAC TCAAGACACT CGGCTTTCAC 
800
GATGATGCCA AGCTTCAGCG ATGGAGATAG CAATAGCAGC ATCATCAGAG 
850
TTGCTTAG
900

>AT1G19000.1 longest ORF length:285
MAAVSSSSET GDCGVTGKRD EIMLFGVRVV VDPMRKCVSL NNLSDYEKSS 
50
PEDEIPKIVT AGAGDGEDKN ETDATVIVAD GYASANDAVQ ISSSSGGRKR 
100
GVPWTENEHK RFLIGLQKVG KGDWKGISRN FVKSRTPTQV ASHAQKYFLR 
150
RTNLNRRRRR SSLFDITTET VTEMAMEQDP TQENSPLPET NISSGQQAMQ 
200
VFTDVPTKTE NAPETFHLND PYLVPVTFQA KPTFNLNTDA APLSLNLCLA 
250
SSFNLNEQPN SRHSAFTMMP SFSDGDSNSS IIRVA
300