fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G19860 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)

>AT1G19860.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 642
EcoRV GAT|ATC 217
NcoI C|CATGG 842, 1119
PstI CTGCA|G 569
PvuII CAG|CTG 389
StyI C|C[AT][AT]GG 842, 1054, 1119


Click here to view TAIR data

>AT1G19860.1 length:1242
ATGAGGGCAT TGCACAAAAG GGTATCGTGG CCACCAGATT TTAAACTTTG 
50
TCAGGTACGG CTATTCATAT CAGAGGATTC ACCTTCACAA GTTGGATCAG 
100
AGTCTCAAGA TCACCTGCAA GCAAAGTCAC CATTGGCTTC ACATCCAAGT 
150
GATGATAATC TGCCACCTGG TTTTGGTGGA CCCTTTTCTG CGAATGAGTC 
200
CCAGATTAAG TTATCAGATA TCCCACTAAT AAAGTGGAAA TGCTCCGTCC 
250
AGATTCTGCT AGATCGGGAA TGGAAAGTGG TTGCAGGGGA CGAAAGCAAA 
300
GAAGTGGAGG CCCAAAATGA GAGGGAATTG AGAGTTCTTG AAGCATTTTA 
350
TCCTGGCGCA TCATCTATTC CTCCAAACCC TTCGGTTCCA GCTGATGTTG 
400
AGGACTCACA TCATGATGAT CAGCAAACCA TTGTCATACC CATCCTACCT 
450
GTAGAAGATG ATGACATAGC GATGGATTCA GCATCTGATT TCCCAACCCA 
500
ATCTGGCGTG GATGTGGGAA CAGAGCCATC AATAACCGAT GAGAACACAT 
550
CAACTTCTTC AACCCTCCCT GCAGGGCCAG ATATAATGGC TGCGTTATCT 
600
GCAATCTCAA ACAGCAAAGA ACAAGGCAGT ATGATCGACC AAGATCTGCT 
650
TATTAAAATC CTAAGCAACC CTAAGTTGGT CGAGAATCTT GTTGCAAATC 
700
GTGGCAGTGC AGGTTCAGTC TCCTCCAACA CAAGTAGCCT CTACTCATCT 
750
TCAACACATG AAGCCAACGG AGTAGTAACC ACGGCACCTA TTTCCTCAAA 
800
TGGACAATTT TACGCTCAGC CACCCATAAC TCATATTCCT CCCATGGCGT 
850
ATACTCCTCA CGCTCCTCAA GACCAACCGA ACTATGGAGC ACCGCCAGCA 
900
AGAGATGCTA GTTATTACAA GAACCTGATT CAGCAACATG GCGGGGATAG 
950
ACAAGAGACG CCGCCAGTTC AACATCTCGG TTATCGATAC AACCTCCAAC 
1000
CTGGAGGAGG ACCTAACCCG GAGATGGTAA ATAGCAGTAA TAATAACCAG 
1050
AGGCCAAGGG ATTCAAAACC CAAGATAATG AAGGCTTGCA TGTACTTCAA 
1100
CAGCGCAAGG GGTTGTCGCC ATGGAGCTAA TTGTATGTAC CAGCACGATG 
1150
CTACACCCTA CCAGCCGAGG AATCTAAACA ATGGTAATAT CAACACTTCT 
1200
GATATGCAGA ATGCAAAAAG AATGAGATTT GACAGAGACT GA
1250

>AT1G19860.1 longest ORF length:413
MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS 
50
DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK 
100
EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP 
150
VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS 
200
AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS 
250
STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA 
300
RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ 
350
RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS 
400
DMQNAKRMRF DRD
450