|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G21340 | AtDof1,2 | Dof-type zinc finger DNA-binding family protein (.1) |
>AT1G21340.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstF5I, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccIII(BspMII) | T|CCGGA | 66 |
| AciI | C|CGC | 232 |
| AluI | AG|CT | 23, 78, 167, 722 |
| ApoI | Pu|AATTPy | 62, 550 |
| BamHI | G|GATCC | 448 |
| BanII | GPuGCPy|C | 420 |
| BclI | T|GATCA | 731 |
| BfaI | C|TAG | 180, 426 |
| BglII | A|GATCT | 626, 759 |
| BsaBI | GATNN|NNATC | 530 |
| BsaJI | C|CNNGG | 639 |
| BsaWI | [AT]|CCGG[AT] | 66 |
| BslI | CCNNNNN|NNGG | 12, 249, 772 |
| BsmI | GAATGCN| | 680 |
| Bsp1286I | G[GAT]GC[CAT]|C | 420 |
| BspEI | T|CCGGA | 66 |
| BspHI | T|CATGA | 728 |
| BsrI | ACTGGN| | 212, 445, 746 |
| BssKI | |CCNGG | 366, 638, 674, 766 |
| BstAPI | GCANNNN|NTGC | 199 |
| BstNI | CC|[AT]GG | 366, 638, 674, 766 |
| BstXI | CCANNNNN|NTGG | 345 |
| BstYI | Pu|GATCPy | 448, 531, 626, 671, 759 |
| DdeI | C|TNAG | 175, 565, 689, 715 |
| DpnI | GA-CH3|TC | 413, 447, 452, 530, 581, 614, 625, 670, 730, 758 |
| DpnII | |GATC | 413, 447, 452, 530, 581, 614, 625, 670, 730, 758 |
| DrdI | GACNNNN|NNGTC | 287 |
| EaeI | Py|GGCCPu | 303, 319 |
| EcoRI | G|AATTC | 550 |
| EcoRV | GAT|ATC | 508 |
| Fnu4HI | GC|NGC | 32, 387 |
| HaeIII | GG|CC | 302, 318 |
| HindIII | A|AGCTT | 79 |
| HinfI | G|ANTC | 314, 349, 459, 492, 538, 662 |
| HpaII | C|CGG | 50, 65, 110, 304 |
| Hpy188I | TCN|GA | 372, 416, 450, 566, 690 |
| Hpy99I | CG[AT]CG| | 204 |
| HpyCH4III | ACN|GT | 286 |
| HpyCH4V | TG|CA | 127, 191 |
| MboI | |GATC | 413, 447, 452, 530, 581, 614, 625, 670, 730, 758 |
| MseI | T|TAA | 333 |
| MspI | C|CGG | 50, 65, 110, 304 |
| MwoI | GCNNNNN|NNGC | 105, 199, 396 |
| NlaIII | CATG| | 482, 727 |
| NlaIV | GGN|NCC | 419, 448, 696 |
| PspGI | |CC[AT]GG | 366, 638, 674, 766 |
| RsaI | GT|AC | 7, 429 |
| Sau3AI | |GATC | 413, 447, 452, 530, 581, 614, 625, 670, 730, 758 |
| ScrFI | CC|NGG | 366, 638, 674, 766 |
| SexAI | A|CC[AT]GGT | 767 |
| SfcI | C|TPuPyAG | 165, 245 |
| Taqƒ¿I | T|CGA | 271, 616, 630, 648 |
| TfiI | G|A[AT]TC | 314, 349, 459, 492, 538, 662 |
| TseI | G|C[AT]GC | 32, 387 |
| Tsp45I | |GT[CG]AC | 289, 408 |
| Tsp509I | |AATT | 61, 549 |
Click here to view TAIR data
>AT1G21340.1 length:783
ATGTTGCCGT ACATTGGACA CAACAGCTAC CAGCAGCACC AGTTTCCGTT | 50 |
GCCGGAGATG GAAATTCCGG AGAAGTGGAA GCTTTCTTAC GAACAAGAGG | 100 |
CTATTACTGC TCCGGCTTGT CCTCGTTGTG CATCGTCCAA CACCAAGTTT | 150 |
TGTTATTACA ACAACTACAG CTTGTCTCAG CCTAGATACT TCTGCAAGGG | 200 |
TTGCCGTCGT TACTGGACGA AAGGCGGTTC TCTCCGCAAC ATTCCTGTAG | 250 |
GTGGAGGCTG TCGCAAGAGA AGTCGAAGCA GACAGAACAG TCACAAAAGG | 300 |
TTTGGCCGGA ACGAGAATCG GCCAGATGGT CTTATTAACC AAGATGATGG | 350 |
ATTCCAGTCC AGCCCTCCTG GTTCTGATAT TGATTTGGCT GCGGTTTTCG | 400 |
CACAATATGT GACTGATCGG AGCCCTTCTA GTACAGATAA TACTACTGGA | 450 |
TCCGATCAAG ATTCACCGAT AACAACAACC ACTCATGCTT TAGAATCTTT | 500 |
GAGTTGGGAT ATCTGCCAAG AAACTGATGT GGATCTTGGA TTCTACGGGG | 550 |
AATTCAATAA TCTAACTCAG AAGACCAAAG AGGATCAAGA AGTATTTGGT | 600 |
CAGTTTCTCC AAGAAGATCG AGAGGAGATC TTCGAGTTCC AGGGTTTACT | 650 |
CGATGACAAA GAGATTCAAG AGATCCTGGA ATGCTCATTC TCAGAGGAGC | 700 |
CAGACCAGTT AGTTTCTCAG GGGAGCTTCA TGATCAATGG TGATAACTGG | 750 |
AGTTCAACAG ATCTTACCAG GTTCGGGATT TGA | 800 |
>AT1G21340.1 longest ORF length:260
MLPYIGHNSY QQHQFPLPEM EIPEKWKLSY EQEAITAPAC PRCASSNTKF | 50 |
CYYNNYSLSQ PRYFCKGCRR YWTKGGSLRN IPVGGGCRKR SRSRQNSHKR | 100 |
FGRNENRPDG LINQDDGFQS SPPGSDIDLA AVFAQYVTDR SPSSTDNTTG | 150 |
SDQDSPITTT THALESLSWD ICQETDVDLG FYGEFNNLTQ KTKEDQEVFG | 200 |
QFLQEDREEI FEFQGLLDDK EIQEILECSF SEEPDQLVSQ GSFMINGDNW | 250 |
SSTDLTRFGI | 300 |