fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G21450 SCL1 SCARECROW-like 1 (.1)

>AT1G21450.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 678
HindIII A|AGCTT 91, 719, 1353, 1366, 1705, 1752
HpaI GTT|AAC 1083
NcoI C|CATGG 338
PstI CTGCA|G 62, 611
SacI GAGCT|C 1726
StyI C|C[AT][AT]GG 338, 762, 1014
XbaI T|CTAGA 1467
XhoI C|TCGAG 1153


Click here to view TAIR data

>AT1G21450.1 length:1782
ATGGTGGAAC AAACTGTGGT TAGAGAACAT ATCAAAGCGA GAGTCATGTC 
50
ATTAGTGAGG TCTGCAGAGC CATCCTCATA TAGGAACCCG AAGCTTTACA 
100
CGTTGAATGA GAATGGTAAT AACAATGGTG TCAGTTCTGC TCAAATCTTT 
150
GATCCAGATA GGTCAAAGAA TCCTTGTCTG ACTGATGATT CTTACCCAAG 
200
CCAAAGTTAT GAGAAGTACT TTCTTGATTC GCCAACTGAT GAGTTTGTTC 
250
AACATCCTAT TGGCTCTGGT GCCTCGGTTA GCTCATTTGG CTCTTTAGAC 
300
TCATTTCCTT ATCAGTCAAG ACCAGTTCTT GGATGTTCCA TGGAATTTCA 
350
GTTACCGTTG GATTCAACCT CTACTTCATC TACAAGGCTT TTGGGAGATT 
400
ACCAAGCGGT TTCTTACAGT CCGAGCATGG ATGTAGTGGA GGAGTTTGAT 
450
GATGAGCAAA TGAGATCAAA GATTCAAGAG CTTGAAAGAG CGCTTCTCGG 
500
CGATGAAGAT GATAAAATGG TTGGAATAGA TAACCTCATG GAGATTGACA 
550
GCGAATGGTC GTACCAAAAC GAAAGCGAAC AGCATCAAGA CTCGCCCAAA 
600
GAATCATCGT CTGCAGATTC CAACTCTCAT GTAAGTAGCA AAGAAGTGGT 
650
GTCTCAAGCC ACTCCAAAGC AAATCTTGAT ATCTTGTGCT CGTGCGCTAT 
700
CTGAAGGAAA ATTAGAAGAA GCTTTGTCAA TGGTAAATGA GCTGAGGCAG 
750
ATAGTTTCTA TCCAAGGAGA CCCTTCTCAG AGAATCGCAG CTTACATGGT 
800
GGAAGGTCTA GCTGCAAGAA TGGCCGCTTC AGGAAAATTC ATCTACAGAG 
850
CATTGAAATG CAAAGAGCCT CCTTCGGATG AGAGGCTTGC AGCTATGCAA 
900
GTCCTGTTTG AAGTCTGCCC TTGTTTCAAG TTCGGGTTTT TAGCAGCTAA 
950
TGGTGCGATA CTTGAAGCAA TCAAAGGTGA AGAAGAAGTT CACATAATCG 
1000
ATTTCGATAT AAACCAAGGG AACCAATACA TGACACTGAT ACGAAGCATT 
1050
GCTGAGTTGC CTGGTAAACG ACCTCGCCTG AGGTTAACAG GAATTGATGA 
1100
CCCTGAATCA GTCCAACGCT CCATTGGAGG GCTAAGAATC ATCGGTCTAA 
1150
GACTCGAGCA ACTCGCAGAG GATAATGGAG TATCCTTCAA ATTCAAAGCA 
1200
ATGCCTTCAA AGACTTCGAT TGTCTCTCCA TCAACACTCG GTTGCAAACC 
1250
AGGAGAAACC TTAATAGTGA ACTTTGCATT CCAACTTCAC CACATGCCTG 
1300
ACGAGAGTGT CACAACAGTA AACCAGCGGG ACGAGCTACT TCACATGGTC 
1350
AAAAGCTTAA ACCCAAAGCT TGTCACGGTC GTTGAACAAG ACGTGAACAC 
1400
AAACACTTCA CCGTTCTTTC CCAGATTCAT AGAGGCTTAC GAATACTACT 
1450
CAGCAGTTTT CGAGTCTCTA GACATGACAC TTCCAAGAGA AAGCCAAGAG 
1500
AGGATGAATG TAGAAAGACA GTGTCTCGCT AGAGACATAG TCAACATTGT 
1550
TGCTTGCGAA GGAGAAGAAC GGATAGAGAG ATACGAGGCT GCGGGAAAAT 
1600
GGAGAGCAAG GATGATGATG GCTGGATTCA ATCCAAAACC AATGAGTGCT 
1650
AAAGTAACCA ACAATATACA AAACCTGATA AAGCAACAAT ATTGCAATAA 
1700
GTACAAGCTT AAAGAAGAAA TGGGTGAGCT CCATTTTTGC TGGGAGGAGA 
1750
AAAGCTTAAT CGTTGCTTCA GCTTGGAGGT AA
1800

>AT1G21450.1 longest ORF length:593
MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF 
50
DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD 
100
SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD 
150
DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK 
200
ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ 
250
IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ 
300
VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI 
350
AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA 
400
MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV 
450
KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE 
500
RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA 
550
KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR
600