fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G21970 AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1)

>AT1G21970.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 364
HindIII A|AGCTT 385
KpnI GGTAC|C 434
NcoI C|CATGG 587
SacI GAGCT|C 11
StyI C|C[AT][AT]GG 587


Click here to view TAIR data

>AT1G21970.1 length:717
ATGGAACGTG GAGCTCCCTT CTCTCACTAT CAGCTACCAA AATCCATCTC 
50
TGAATTGAAC TTGGACCAGC ACAGCAACAA CCCAACCCCA ATGACCAGCT 
100
CAGTCGTAGT AGCCGGCGCC GGTGACAAGA ACAATGGTAT CGTGGTCCAG 
150
CAGCAACCAC CATGTGTGGC TCGTGAGCAA GACCAATACA TGCCAATCGC 
200
AAACGTCATA AGAATCATGC GTAAAACCTT ACCGTCTCAC GCCAAAATCT 
250
CTGACGACGC CAAAGAAACG ATTCAAGAAT GTGTCTCCGA GTACATCAGC 
300
TTCGTGACCG GTGAAGCCAA CGAGCGTTGC CAACGTGAGC AACGTAAGAC 
350
CATAACTGCT GAAGATATCC TTTGGGCTAT GAGCAAGCTT GGGTTCGATA 
400
ACTACGTGGA CCCCCTCACC GTGTTCATTA ACCGGTACCG TGAGATAGAG 
450
ACCGATCGTG GTTCTGCACT TAGAGGTGAG CCACCGTCGT TGAGACAAAC 
500
CTATGGAGGA AATGGTATTG GGTTTCACGG CCCATCTCAT GGCCTACCTC 
550
CTCCGGGTCC TTATGGTTAT GGTATGTTGG ACCAATCCAT GGTTATGGGA 
600
GGTGGTCGGT ACTACCAAAA CGGGTCGTCG GGTCAAGATG AATCCAGTGT 
650
TGGTGGTGGC TCTTCGTCTT CCATTAACGG AATGCCGGCT TTTGACCATT 
700
ATGGTCAGTA TAAGTGA
750

>AT1G21970.1 longest ORF length:238
MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ 
50
QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS 
100
FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE 
150
TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG 
200
GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
250