fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G22070 TGA3 TGA1A-related gene 3 (.1)

>AT1G22070.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AflII, AflIII, AgeI, AhdI, AlwI, ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstUI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AciI C|CGC 646, 745
AfeI AGC|GCT 570
AluI AG|CT 11, 322, 396, 418, 475, 577, 597, 655, 756, 1129
AlwNI CAGNNN|CTG 805, 1024
Aor51HI(Eco47III) AGC|GCT 570
AvaI C|PyCGPuG 400, 1067
AvaII G|G[AT]CC 471
BanII GPuGCPy|C 12, 598, 787, 944
BclI T|GATCA 264
BfaI C|TAG 126, 177, 420, 459, 467, 530, 1082
BsaJI C|CNNGG 962
BsaWI [AT]|CCGG[AT] 278
BsiHKAI G[AT]GC[AT]|C 12, 598, 1109
BsiWI C|GTACG 441
BsoBI C|PyCGPuG 400, 1067
Bsp1286I G[GAT]GC[CAT]|C 12, 598, 787, 944, 1109
BsrFI Pu|CCGGPy 380
BsrI ACTGGN| 527
BssKI |CCNGG 998
BstBI TT|CGAA 563
BstF5I GGATGNN| 60
BstNI CC|[AT]GG 998
BstXI CCANNNNN|NTGG 735
BtgI C|CPuPyGG 962
Cac8I GCN|NGC 328, 843, 1077, 1107
Cfr10I [AG]|CCGG[TC] 380
DdeI C|TNAG 310, 491, 838, 869, 1011, 1113
DpnI GA-CH3|TC 263, 280, 797, 1004
DpnII |GATC 263, 280, 797, 1004
DraI TTT|AAA 762
EcoRV GAT|ATC 112
Fnu4HI GC|NGC 324, 425, 501, 663, 1028, 1062, 1103, 1128
HaeII PuGCGC|Py 570
HaeIII GG|CC 352
HhaI GCG|C 569
HinP1I G|CGC 569
HinfI G|ANTC 95, 560, 927, 935, 968
HpaII C|CGG 277, 379
Hpy188I TCN|GA 46, 108, 134, 146, 311, 453, 753, 911, 1010
Hpy99I CG[AT]CG| 250
HpyCH4III ACN|GT 77, 248, 365, 806, 830
HpyCH4IV A|CGT 780
HpyCH4V TG|CA 502, 664, 825, 1026
MboI |GATC 263, 280, 797, 1004
MseI T|TAA 761, 791
MslI CAPyNN|NNPuTG 58, 587
MspA1I C[AC]G|C[GT]G 476
MspI C|CGG 277, 379
MwoI GCNNNNN|NNGC 536, 576, 663, 824, 852, 951
N.BstNBI GAGTCNNNN|N 100, 932
NcoI C|CATGG 962
NlaIII CATG| 52, 356, 649, 961
NlaIV GGN|NCC 945
PaeR7I C|TCGAG 400, 1067
PspGI |CC[AT]GG 998
PstI CTGCA|G 1027
PvuII CAG|CTG 476
RsaI GT|AC 440
SacI GAGCT|C 12, 598
Sau3AI |GATC 263, 280, 797, 1004
Sau96I G|GNCC 353, 471
ScrFI CC|NGG 998
SfcI C|TPuPyAG 1027
SmlI C|TPyPuAG 32, 166, 400, 863, 1067
SpeI A|CTAGT 127, 460
SspI AAT|ATT 121
StyI C|C[AT][AT]GG 962
Taq��I T|CGA 251, 399, 562, 894, 1066
TfiI G|A[AT]TC 560, 935, 968
TliI C|TCGAG 400, 1067
TseI G|C[AT]GC 324, 425, 501, 663, 1028, 1062, 1103, 1128
Tsp45I |GT[CG]AC 392, 589
Tsp509I |AATT 209, 446, 907
TspRI NNCA[CG]TGNN| 527
XhoI C|TCGAG 400, 1067
XmnI GAANN|NNTTC 71


Click here to view TAIR data

>AT1G22070.1 length:1155
ATGGAGATGA TGAGCTCTTC TTCTTCTACT ACTCAAGTTG TATCATTCAG 
50
AGACATGGGG ATGTATGAAC CATTTCAACA GTTATCTGGT TGGGAGAGTC 
100
CTTTCAAATC AGATATCAAC AATATTACTA GTAATCAGAA TAACAATCAG 
150
AGTTCTTCAA CAACACTTGA GGTTGATGCT AGACCAGAAG CAGATGATAA 
200
CAATAGAGTG AATTATACTT CTGTGTATAA TAACTCTCTT GAAGCAGAAC 
250
CGTCGAGTAA TAATGATCAG GACGAAGACC GGATCAATGA TAAGATGAAA 
300
CGGCGTTTGG CTCAGAACCG AGAAGCTGCT CGCAAAAGTC GTTTGAGAAA 
350
GAAGGCCCAT GTTCAACAGT TAGAAGAAAG CCGGTTGAAG TTGTCACAGC 
400
TCGAGCAGGA ACTTGTAAGA GCTAGGCAGC AGGGATTATG CGTACGCAAT 
450
TCTTCAGATA CTAGTTATCT AGGACCAGCT GGGAATATGA ACTCAGGTAT 
500
TGCTGCATTT GAGATGGAAT ACACACACTG GCTAGAAGAG CAAAACAGGA 
550
GAGTTAGTGA GATTCGAACA GCGCTCCAAG CTCATATAGG TGACATTGAG 
600
CTCAAAATGT TGGTAGATAG TTGCTTGAAC CACTACGCAA ATCTCTTCCG 
650
CATGAAAGCT GATGCTGCAA AGGCTGATGT GTTCTTCTTG ATGTCGGGAA 
700
TGTGGCGAAC TTCAACTGAA CGCTTCTTCC AATGGATTGG AGGTTTCCGC 
750
CCATCCGAGC TTTTAAATGT TGTGATGCCA TACGTTGAGC CCTTAACCGA 
800
TCAGCAACTG TTGGAGGTGC GTAACCTGCA ACAGTCGTCT CAGCAAGCAG 
850
AGGAGGCTCT CTCTCAAGGC TTAGATAAAC TTCAGCAGGG TTTGGTCGAA 
900
AGCATAGCAA TTCAGATAAA AGTTGTTGAG TCTGTGAATC ACGGGGCTCC 
950
AATGGCTTCA GCCATGGAGA ATCTTCAAGC ATTGGAGAGT TTTGTGAACC 
1000
AGGCGGATCA TCTGAGACAA CAGACCCTGC AGCAAATGAG TAAGATATTG 
1050
ACGACAAGAC AGGCTGCTCG AGGGTTGCTC GCTCTAGGAG AATACTTCCA 
1100
CAGGCTGCGT GCTCTTAGTT CTCTCTGGGC AGCTCGTCCA CGAGAACACA 
1150
CTTGA
1200

>AT1G22070.1 longest ORF length:384
MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ 
50
SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK 
100
RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN 
150
SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE 
200
LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR 
250
PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE 
300
SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL 
350
TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
400