Locus |
Common name |
Short description |
AT1G22070 |
TGA3 |
TGA1A-related gene 3 (.1) |
>AT1G22070.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AflII, AflIII, AgeI, AhdI, AlwI, ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstUI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI
Name |
Recognition sequence |
Cut positions |
AciI
| C|CGC |
646, 745 |
AfeI
| AGC|GCT |
570 |
AluI
| AG|CT |
11, 322, 396, 418, 475, 577, 597, 655, 756, 1129 |
AlwNI
| CAGNNN|CTG |
805, 1024 |
Aor51HI(Eco47III)
| AGC|GCT |
570 |
AvaI
| C|PyCGPuG |
400, 1067 |
AvaII
| G|G[AT]CC |
471 |
BanII
| GPuGCPy|C |
12, 598, 787, 944 |
BclI
| T|GATCA |
264 |
BfaI
| C|TAG |
126, 177, 420, 459, 467, 530, 1082 |
BsaJI
| C|CNNGG |
962 |
BsaWI
| [AT]|CCGG[AT] |
278 |
BsiHKAI
| G[AT]GC[AT]|C |
12, 598, 1109 |
BsiWI
| C|GTACG |
441 |
BsoBI
| C|PyCGPuG |
400, 1067 |
Bsp1286I
| G[GAT]GC[CAT]|C |
12, 598, 787, 944, 1109 |
BsrFI
| Pu|CCGGPy |
380 |
BsrI
| ACTGGN| |
527 |
BssKI
| |CCNGG |
998 |
BstBI
| TT|CGAA |
563 |
BstF5I
| GGATGNN| |
60 |
BstNI
| CC|[AT]GG |
998 |
BstXI
| CCANNNNN|NTGG |
735 |
BtgI
| C|CPuPyGG |
962 |
Cac8I
| GCN|NGC |
328, 843, 1077, 1107 |
Cfr10I
| [AG]|CCGG[TC] |
380 |
DdeI
| C|TNAG |
310, 491, 838, 869, 1011, 1113 |
DpnI
| GA-CH3|TC |
263, 280, 797, 1004 |
DpnII
| |GATC |
263, 280, 797, 1004 |
DraI
| TTT|AAA |
762 |
EcoRV
| GAT|ATC |
112 |
Fnu4HI
| GC|NGC |
324, 425, 501, 663, 1028, 1062, 1103, 1128 |
HaeII
| PuGCGC|Py |
570 |
HaeIII
| GG|CC |
352 |
HhaI
| GCG|C |
569 |
HinP1I
| G|CGC |
569 |
HinfI
| G|ANTC |
95, 560, 927, 935, 968 |
HpaII
| C|CGG |
277, 379 |
Hpy188I
| TCN|GA |
46, 108, 134, 146, 311, 453, 753, 911, 1010 |
Hpy99I
| CG[AT]CG| |
250 |
HpyCH4III
| ACN|GT |
77, 248, 365, 806, 830 |
HpyCH4IV
| A|CGT |
780 |
HpyCH4V
| TG|CA |
502, 664, 825, 1026 |
MboI
| |GATC |
263, 280, 797, 1004 |
MseI
| T|TAA |
761, 791 |
MslI
| CAPyNN|NNPuTG |
58, 587 |
MspA1I
| C[AC]G|C[GT]G |
476 |
MspI
| C|CGG |
277, 379 |
MwoI
| GCNNNNN|NNGC |
536, 576, 663, 824, 852, 951 |
N.BstNBI
| GAGTCNNNN|N |
100, 932 |
NcoI
| C|CATGG |
962 |
NlaIII
| CATG| |
52, 356, 649, 961 |
NlaIV
| GGN|NCC |
945 |
PaeR7I
| C|TCGAG |
400, 1067 |
PspGI
| |CC[AT]GG |
998 |
PstI
| CTGCA|G |
1027 |
PvuII
| CAG|CTG |
476 |
RsaI
| GT|AC |
440 |
SacI
| GAGCT|C |
12, 598 |
Sau3AI
| |GATC |
263, 280, 797, 1004 |
Sau96I
| G|GNCC |
353, 471 |
ScrFI
| CC|NGG |
998 |
SfcI
| C|TPuPyAG |
1027 |
SmlI
| C|TPyPuAG |
32, 166, 400, 863, 1067 |
SpeI
| A|CTAGT |
127, 460 |
SspI
| AAT|ATT |
121 |
StyI
| C|C[AT][AT]GG |
962 |
Taq��I
| T|CGA |
251, 399, 562, 894, 1066 |
TfiI
| G|A[AT]TC |
560, 935, 968 |
TliI
| C|TCGAG |
400, 1067 |
TseI
| G|C[AT]GC |
324, 425, 501, 663, 1028, 1062, 1103, 1128 |
Tsp45I
| |GT[CG]AC |
392, 589 |
Tsp509I
| |AATT |
209, 446, 907 |
TspRI
| NNCA[CG]TGNN| |
527 |
XhoI
| C|TCGAG |
400, 1067 |
XmnI
| GAANN|NNTTC |
71 |
Click here to view TAIR data
>AT1G22070.1 length:1155
ATGGAGATGA TGAGCTCTTC TTCTTCTACT ACTCAAGTTG TATCATTCAG | 50 |
AGACATGGGG ATGTATGAAC CATTTCAACA GTTATCTGGT TGGGAGAGTC | 100 |
CTTTCAAATC AGATATCAAC AATATTACTA GTAATCAGAA TAACAATCAG | 150 |
AGTTCTTCAA CAACACTTGA GGTTGATGCT AGACCAGAAG CAGATGATAA | 200 |
CAATAGAGTG AATTATACTT CTGTGTATAA TAACTCTCTT GAAGCAGAAC | 250 |
CGTCGAGTAA TAATGATCAG GACGAAGACC GGATCAATGA TAAGATGAAA | 300 |
CGGCGTTTGG CTCAGAACCG AGAAGCTGCT CGCAAAAGTC GTTTGAGAAA | 350 |
GAAGGCCCAT GTTCAACAGT TAGAAGAAAG CCGGTTGAAG TTGTCACAGC | 400 |
TCGAGCAGGA ACTTGTAAGA GCTAGGCAGC AGGGATTATG CGTACGCAAT | 450 |
TCTTCAGATA CTAGTTATCT AGGACCAGCT GGGAATATGA ACTCAGGTAT | 500 |
TGCTGCATTT GAGATGGAAT ACACACACTG GCTAGAAGAG CAAAACAGGA | 550 |
GAGTTAGTGA GATTCGAACA GCGCTCCAAG CTCATATAGG TGACATTGAG | 600 |
CTCAAAATGT TGGTAGATAG TTGCTTGAAC CACTACGCAA ATCTCTTCCG | 650 |
CATGAAAGCT GATGCTGCAA AGGCTGATGT GTTCTTCTTG ATGTCGGGAA | 700 |
TGTGGCGAAC TTCAACTGAA CGCTTCTTCC AATGGATTGG AGGTTTCCGC | 750 |
CCATCCGAGC TTTTAAATGT TGTGATGCCA TACGTTGAGC CCTTAACCGA | 800 |
TCAGCAACTG TTGGAGGTGC GTAACCTGCA ACAGTCGTCT CAGCAAGCAG | 850 |
AGGAGGCTCT CTCTCAAGGC TTAGATAAAC TTCAGCAGGG TTTGGTCGAA | 900 |
AGCATAGCAA TTCAGATAAA AGTTGTTGAG TCTGTGAATC ACGGGGCTCC | 950 |
AATGGCTTCA GCCATGGAGA ATCTTCAAGC ATTGGAGAGT TTTGTGAACC | 1000 |
AGGCGGATCA TCTGAGACAA CAGACCCTGC AGCAAATGAG TAAGATATTG | 1050 |
ACGACAAGAC AGGCTGCTCG AGGGTTGCTC GCTCTAGGAG AATACTTCCA | 1100 |
CAGGCTGCGT GCTCTTAGTT CTCTCTGGGC AGCTCGTCCA CGAGAACACA | 1150 |
CTTGA | 1200 |
>AT1G22070.1 longest ORF length:384
MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ | 50 |
SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK | 100 |
RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN | 150 |
SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE | 200 |
LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR | 250 |
PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE | 300 |
SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL | 350 |
TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT | 400 |
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