fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G22070 TGA3 TGA1A-related gene 3 (.1)

>AT1G22070.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, SalI, SmaI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 112
NcoI C|CATGG 962
PstI CTGCA|G 1027
PvuII CAG|CTG 476
SacI GAGCT|C 12, 598
SpeI A|CTAGT 127, 460
StyI C|C[AT][AT]GG 962
XhoI C|TCGAG 400, 1067


Click here to view TAIR data

>AT1G22070.1 length:1155
ATGGAGATGA TGAGCTCTTC TTCTTCTACT ACTCAAGTTG TATCATTCAG 
50
AGACATGGGG ATGTATGAAC CATTTCAACA GTTATCTGGT TGGGAGAGTC 
100
CTTTCAAATC AGATATCAAC AATATTACTA GTAATCAGAA TAACAATCAG 
150
AGTTCTTCAA CAACACTTGA GGTTGATGCT AGACCAGAAG CAGATGATAA 
200
CAATAGAGTG AATTATACTT CTGTGTATAA TAACTCTCTT GAAGCAGAAC 
250
CGTCGAGTAA TAATGATCAG GACGAAGACC GGATCAATGA TAAGATGAAA 
300
CGGCGTTTGG CTCAGAACCG AGAAGCTGCT CGCAAAAGTC GTTTGAGAAA 
350
GAAGGCCCAT GTTCAACAGT TAGAAGAAAG CCGGTTGAAG TTGTCACAGC 
400
TCGAGCAGGA ACTTGTAAGA GCTAGGCAGC AGGGATTATG CGTACGCAAT 
450
TCTTCAGATA CTAGTTATCT AGGACCAGCT GGGAATATGA ACTCAGGTAT 
500
TGCTGCATTT GAGATGGAAT ACACACACTG GCTAGAAGAG CAAAACAGGA 
550
GAGTTAGTGA GATTCGAACA GCGCTCCAAG CTCATATAGG TGACATTGAG 
600
CTCAAAATGT TGGTAGATAG TTGCTTGAAC CACTACGCAA ATCTCTTCCG 
650
CATGAAAGCT GATGCTGCAA AGGCTGATGT GTTCTTCTTG ATGTCGGGAA 
700
TGTGGCGAAC TTCAACTGAA CGCTTCTTCC AATGGATTGG AGGTTTCCGC 
750
CCATCCGAGC TTTTAAATGT TGTGATGCCA TACGTTGAGC CCTTAACCGA 
800
TCAGCAACTG TTGGAGGTGC GTAACCTGCA ACAGTCGTCT CAGCAAGCAG 
850
AGGAGGCTCT CTCTCAAGGC TTAGATAAAC TTCAGCAGGG TTTGGTCGAA 
900
AGCATAGCAA TTCAGATAAA AGTTGTTGAG TCTGTGAATC ACGGGGCTCC 
950
AATGGCTTCA GCCATGGAGA ATCTTCAAGC ATTGGAGAGT TTTGTGAACC 
1000
AGGCGGATCA TCTGAGACAA CAGACCCTGC AGCAAATGAG TAAGATATTG 
1050
ACGACAAGAC AGGCTGCTCG AGGGTTGCTC GCTCTAGGAG AATACTTCCA 
1100
CAGGCTGCGT GCTCTTAGTT CTCTCTGGGC AGCTCGTCCA CGAGAACACA 
1150
CTTGA
1200

>AT1G22070.1 longest ORF length:384
MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ 
50
SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK 
100
RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN 
150
SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE 
200
LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR 
250
PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE 
300
SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL 
350
TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT
400