|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G24590 | ESR2, DRNL, SOB2, DRN-LIKE | FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) |
>AT1G24590.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, EarI, EciI, EcoNI, EcoRI, FauI, FokI, FseI, HgaI, HindIII, HphI, I-CeuI, I-SceI, MboII, MfeI, MluI, MlyI, MnlI, MscI, , NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tsp45I, TspRI, Tth111I, XbaI, XmaI
| Name | Recognition sequence | Cut positions |
| Acc65I | G|GTACC | 170 |
| AccI | GT|[AC][TG]AC | 340 |
| AciI | C|CGC | 120, 297, 464 |
| AflIII | A|CPuPyGT | 419 |
| AhdI | GACNNN|NNGTC | 228 |
| AluI | AG|CT | 91, 127, 208, 277, 322, 550, 613, 763, 853 |
| AlwNI | CAGNNN|CTG | 95 |
| AvaI | C|PyCGPuG | 302 |
| AvaII | G|G[AT]CC | 221 |
| BanI | G|GPyPuCC | 28, 139, 170 |
| BclI | T|GATCA | 831 |
| BfaI | C|TAG | 615 |
| BglII | A|GATCT | 537 |
| BsaHI | GPu|CGPyC | 139 |
| BsaJI | C|CNNGG | 174, 193, 233, 269 |
| BsaWI | [AT]|CCGG[AT] | 151 |
| BsiEI | CGPuPy|CG | 266 |
| BsiHKAI | G[AT]GC[AT]|C | 34 |
| BslI | CCNNNNN|NNGG | 707, 738 |
| BsoBI | C|PyCGPuG | 302 |
| Bsp1286I | G[GAT]GC[CAT]|C | 34 |
| BspHI | T|CATGA | 14, 834, 906 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 28, 139, 170 |
| BsrBI | GAG|CGG | 738 |
| BsrFI | Pu|CCGGPy | 142 |
| BssKI | |CCNGG | 96, 105 |
| BstAPI | GCANNNN|NTGC | 129 |
| BstNI | CC|[AT]GG | 96 |
| BstYI | Pu|GATCPy | 537 |
| BtgI | C|CPuPyGG | 193 |
| Cac8I | GCN|NGC | 142, 280 |
| Cfr10I | [AG]|CCGG[TC] | 142 |
| DdeI | C|TNAG | 430, 553, 856 |
| DpnI | GA-CH3|TC | 536, 830 |
| DpnII | |GATC | 536, 830 |
| DrdI | GACNNNN|NNGTC | 775 |
| EaeI | Py|GGCCPu | 266 |
| EagI | C|GGCCG | 266 |
| EcoO109I | PuG|GNCCPy | 222 |
| EcoRV | GAT|ATC | 588 |
| Fnu4HI | GC|NGC | 129, 207, 276, 297, 863 |
| FspI | TGC|GCA | 283 |
| HaeII | PuGCGC|Py | 139, 145 |
| HaeIII | GG|CC | 189, 265 |
| HhaI | GCG|C | 138, 144, 282, 294 |
| HinP1I | G|CGC | 138, 144, 282, 294 |
| HincII | GTPy|PuAC | 447, 520 |
| HinfI | G|ANTC | 19, 360, 504, 790, 849 |
| HpaI | GTT|AAC | 447 |
| HpaII | C|CGG | 105, 135, 141, 150 |
| Hpy188I | TCN|GA | 250, 746 |
| Hpy99I | CG[AT]CG| | 491, 724 |
| HpyCH4III | ACN|GT | 373, 704 |
| HpyCH4IV | A|CGT | 417, 483, 492, 516 |
| HpyCH4V | TG|CA | 861 |
| KasI | G|GCGCC | 139 |
| KpnI | GGTAC|C | 170 |
| MboI | |GATC | 536, 830 |
| MseI | T|TAA | 318, 422, 446, 801 |
| MslI | CAPyNN|NNPuTG | 839 |
| MspA1I | C[AC]G|C[GT]G | 209 |
| MspI | C|CGG | 105, 135, 141, 150 |
| MwoI | GCNNNNN|NNGC | 129, 273, 303 |
| N.BstNBI | GAGTCNNNN|N | 509 |
| NaeI | GCC|GGC | 142 |
| NarI | GG|CGCC | 139 |
| NciI | CC|[CG]GG | 105 |
| NcoI | C|CATGG | 193 |
| NdeI | CA|TATG | 287 |
| NgoMIV | G|CCGGC | 142 |
| NlaIII | CATG| | 13, 192, 307, 674, 773, 809, 833, 905 |
| NlaIV | GGN|NCC | 28, 139, 170, 221 |
| NspI | PuCATG|Py | 675 |
| PaeR7I | C|TCGAG | 302 |
| PpuMI | PuG|G[AT]CCPy | 222 |
| PspGI | |CC[AT]GG | 96 |
| PvuII | CAG|CTG | 209 |
| RsaI | GT|AC | 169, 564 |
| Sau3AI | |GATC | 536, 830 |
| Sau96I | G|GNCC | 221 |
| ScrFI | CC|NGG | 96, 105 |
| SfoI | GGC|GCC | 139 |
| SgrAI | CPu|CCGGPyG | 143 |
| SmlI | C|TPyPuAG | 302 |
| StyI | C|C[AT][AT]GG | 193, 233 |
| Taqƒ¿I | T|CGA | 21, 86, 301, 325, 357, 777 |
| TfiI | G|A[AT]TC | 790, 849 |
| TliI | C|TCGAG | 302 |
| TseI | G|C[AT]GC | 129, 207, 276, 863 |
| Tsp509I | |AATT | 637 |
| XcmI | CCANNNNN|NNNNTGG | 711 |
| XhoI | C|TCGAG | 302 |
| XmnI | GAANN|NNTTC | 403, 641 |
Click here to view TAIR data
>AT1G24590.1 length:921
ATGGAAGAAG CAATCATGAG ACTCGAAGGT GCCGAGCACA GAGAAACCAA | 50 |
CATCCATTCT TTGAAAAGAA AGCCATCAAG AACTTCCTCG ACAGCTCCTG | 100 |
GCTCTCCCGG AGGAGTAACT ACCGCAAAAG CTGCCTCCGG CGCCGGCGCT | 150 |
TCCGGTGTCT CTACGATAAG GTACCGAGGC GTGAGGCGTA GGCCATGGGG | 200 |
TCGTTACGCA GCTGAAATAC GGGACCCATT GTCCAAGGAG AGACGATGGC | 250 |
TCGGAACATT TGACACGGCC GAGGAAGCAG CTTGCGCATA TGACTGCGCC | 300 |
GCTCGAGCCA TGCGTGGTCT TAAAGCTCGA ACCAACTTCG TCTACCCAAT | 350 |
GCCTTCTCTC GACTCTTATC ACCACCGTAT TTTCTCGTCT CCTCCAATGA | 400 |
ATATGTTCCT TCTACGAGAC GTGTTAAACT CTCAGTCTCT TTCTCCGTTA | 450 |
ACCACTTTCG CTTACCCGCC TTGTAATCTT TCTAACGTAA ACGACGTTGT | 500 |
TCACGAGTCC TTCACTAACG TCAACGATGT CTGTGAAGAT CTCTCGCCTA | 550 |
AAGCTAAGAG GTCAAGTACC ATTGAGAACG AGAGCCTGAT ATCAAATATC | 600 |
TTTGAACCAG AACCAGCTAG TTCTGGTCTT CTTCAAGAAA TTGTTCAAGG | 650 |
CTTCTTACCA AAACCTATCT CTCAACATGC TTCTATACCT CCAAAGAGCA | 700 |
ACCAACAGTC GGTTGGTGTT TTCCCGACGA TGCCAGAGAG CGGTTTTCAG | 750 |
ACAGATGTTC GTTTAGCTGA CTTCCATGTC GAAGGAAACG GATTCGGTCA | 800 |
GGTTAAATAT CATGGAGAGT TAGGTTGGGC TGATCATGAG AATGGGTTTG | 850 |
ATTCAGCTAA GATGCAGCAG AACGGAAATG GTGGAATGTT TTATCAGTAT | 900 |
TGCTTTCATG ATGATTATTA G | 950 |
>AT1G24590.1 longest ORF length:306
MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA | 50 |
SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA | 100 |
ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL | 150 |
TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI | 200 |
FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ | 250 |
TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY | 300 |
CFHDDY | 350 |