fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G25250 ATIDD16 indeterminate(ID)-domain 16 (.1)

>AT1G25250.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 125, 297
HindIII A|AGCTT 196, 588
NcoI C|CATGG 190
PvuII CAG|CTG 1003
StyI C|C[AT][AT]GG 135, 190


Click here to view TAIR data

>AT1G25250.1 length:1089
ATGGAGCTGA CGCAACCCAT AAGAGAAAAC GGAGACCCGC AGGGACACCA 
50
GCTAACAGAT CCAGATGCAG AGGTGGTATC TTTGTCACCA AGAACGTTAC 
100
TAGAATCAGA TCGGTACGTG TGTGAGATCT GCAACCAAGG GTTTCAGAGA 
150
GATCAGAATC TACAGATGCA TAGAAGACGA CATAAAGTGC CATGGAAGCT 
200
TCTGAAGAGA GACAAGAAGG ATGAGGAAGT GAGGAAGAGA GTCTACGTGT 
250
GTCCTGAGCC AACATGTCTC CACCATGACC CGTGCCACGC TCTTGGAGAT 
300
CTGGTCGGAA TCAAAAAGCA CTTCCGCCGT AAACACAGTG TCCACAAGCA 
350
ATGGGTTTGC GAGAGATGCT CCAAAGGCTA TGCAGTTCAA TCTGACTACA 
400
AAGCCCATCT CAAGACCTGC GGTTCACGCG GTCACTCCTG CGACTGTGGC 
450
CGCGTTTTCT CCAGGGTTGA GAGTTTCATA GAGCATCAAG ATACTTGCAC 
500
CATCCGGCAA CCTCAACCCA CCAACCACCG TCATCTACAG CAGCACACGA 
550
TGGGCCTTGA CGCTCCATCA AGAACCACTT CGACAGCAAG CTTCGGCCCT 
600
TTATTGCATG GACTTCCTTT GTTAAGACCT CCACGACCGT CCAATCAACA 
650
TTCACCAGCT TTTGCTTACC CTTTCAATGC TTCATCAGCT CCTTTCGAAA 
700
GCCTCGAACT TCAACTATCC ATAGGAATGG CAAGAACATC AGCACAAGCG 
750
AGGCACAACG AAAAGAGAGA GACGAGTTTA ACAAAGGAGA GAGCGAACGA 
800
GGAGGCAAGG AAGGCAGAGG AAACGAGACA AGAAGCGAAA AGGCAGATAG 
850
AGATGGCAGA AAAGGATTTT GAGAAAGCTA AGAGAATAAG GGAAGAAGCA 
900
AAAACCGAGT TGGAGAAGGC TCACGTTGTT AGAGAAGAAG CAATCAAGAG 
950
GATTAATGCA ACAATGATGG AGATCACTTG CCACTCTTGC AAGCAACTAT 
1000
TTCAGCTGCC TGTTACGGCT GATGAGAGTA CGTCGTCTCT TGTTATGAGT 
1050
TACGTTTCCT CGGCGACAAC TGAAGGAGAA TGCGAGTGA
1100

>AT1G25250.1 longest ORF length:362
MELTQPIREN GDPQGHQLTD PDAEVVSLSP RTLLESDRYV CEICNQGFQR 
50
DQNLQMHRRR HKVPWKLLKR DKKDEEVRKR VYVCPEPTCL HHDPCHALGD 
100
LVGIKKHFRR KHSVHKQWVC ERCSKGYAVQ SDYKAHLKTC GSRGHSCDCG 
150
RVFSRVESFI EHQDTCTIRQ PQPTNHRHLQ QHTMGLDAPS RTTSTASFGP 
200
LLHGLPLLRP PRPSNQHSPA FAYPFNASSA PFESLELQLS IGMARTSAQA 
250
RHNEKRETSL TKERANEEAR KAEETRQEAK RQIEMAEKDF EKAKRIREEA 
300
KTELEKAHVV REEAIKRINA TMMEITCHSC KQLFQLPVTA DESTSSLVMS 
350
YVSSATTEGE CE
400