fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G25280 AtTLP10 tubby like protein 10 (.1.2.3)

>AT1G25280.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
HindIII A|AGCTT 1321
NcoI C|CATGG 533
SacI GAGCT|C 754
StyI C|C[AT][AT]GG 533, 597, 1045
XbaI T|CTAGA 961
XhoI C|TCGAG 78


Click here to view TAIR data

>AT1G25280.1 length:1338
ATGTCGTTTC GAGGCATTGT TCAAGATTTG AGAGATGGGT TTGGGAGCTT 
50
GTCAAGGAGG AGTTTCGATT TTAGGCTCTC GAGTCTTCAT AAAGGGAAAG 
100
CTCAGGGTTC TTCGTTCCGT GAGTATTCGT CATCCCGTGA TCTCTTGTCG 
150
CCTGTGATAG TTCAGACAAG TAGATGGGCT AATCTTCCTC CAGAGTTACT 
200
CTTTGATGTG ATCAAAAGAT TAGAGGAAAG TGAGAGTAAT TGGCCTGCAA 
250
GAAAACATGT TGTGGCTTGT GCTTCGGTTT GTCGGTCTTG GAGAGCTATG 
300
TGCCAAGAGA TTGTTTTGGG GCCTGAAATC TGTGGGAAAC TCACTTTCCC 
350
TGTTTCCCTC AAACAGCCAG GGCCTCGTGA TGCAATGATT CAGTGTTTCA 
400
TCAAAAGGGA TAAATCAAAG CTAACATTTC ACCTTTTTCT TTGTTTAAGT 
450
CCCGCTCTAT TAGTGGAGAA TGGGAAATTT CTTCTTTCAG CTAAAAGAAC 
500
TCGTAGAACT ACTCGAACCG AGTACATTAT CTCCATGGAT GCTGATAACA 
550
TCTCAAGATC CAGCAACTCT TACCTCGGAA AGCTCAGATC AAACTTCCTT 
600
GGGACAAAGT TCTTGGTGTA CGACACGCAA CCACCACCAA ACACATCTTC 
650
GAGCGCACTT ATCACTGATC GAACAAGCCG AAGCAGGTTT CACTCCAGAC 
700
GAGTTTCTCC TAAAGTACCA TCCGGAAGCT ACAACATTGC TCAAATCACC 
750
TATGAGCTCA ACGTGTTGGG CACACGCGGG CCACGACGAA TGCACTGCAT 
800
CATGAACTCC ATCCCAATTT CATCGCTCGA ACCAGGCGGT TCAGTCCCTA 
850
ACCAACCCGA GAAACTCGTC CCTGCACCAT ACTCTCTCGA CGACTCATTC 
900
CGCAGTAACA TCTCCTTCTC CAAATCATCA TTTGACCACC GCTCCCTCGA 
950
TTTCAGCAGT TCTAGATTCT CCGAAATGGG AATATCCTGC GACGACAACG 
1000
AAGAAGAAGC GAGTTTCAGA CCGTTGATTC TAAAGAACAA GCAGCCAAGG 
1050
TGGCACGAGC AGTTGCAATG CTGGTGTTTG AATTTCCGCG GACGTGTGAC 
1100
AGTTGCATCG GTTAAGAATT TCCAGCTTGT AGCAGCAAGA CAGCCGCAGC 
1150
CTCAAGGGAC AGGTGCAGCA GCAGCACCAA CAAGTGCACC TGCTCACCCT 
1200
GAGCAAGACA AGGTGATTCT CCAGTTTGGT AAAGTAGGGA AAGATATGTT 
1250
CACAATGGAC TATAGGTATC CATTATCGGC GTTTCAGGCG TTTGCGATAT 
1300
GCTTAAGCAG CTTTGACACC AAGCTTGCTT GTGAATAG
1350

>AT1G25280.1 longest ORF length:445
MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS 
50
PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM 
100
CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS 
150
PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL 
200
GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT 
250
YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF 
300
RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR 
350
WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP 
400
EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
450