fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G25340 ATMYB116 myb domain protein 116 (.1.2)

>AT1G25340.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 570, 792
EcoRV GAT|ATC 325
SacI GAGCT|C 256
StyI C|C[AT][AT]GG 64, 626
XhoI C|TCGAG 73


Click here to view TAIR data

>AT1G25340.1 length:852
ATGTCAAATA TAACAAAGAA GAAGTGTAAT GGAAATGAAG AGGGTGCAGA 
50
GCAGAGGAAA GGGCCTTGGA CACTCGAGGA AGACACTCTT CTCACCAATT 
100
ACATTTCCCA TAACGGTGAA GGCCGATGGA ATCTGCTCGC TAAATCTTCT 
150
GGGCTAAAGA GAGCAGGAAA AAGTTGTAGA TTGAGATGGT TGAATTACCT 
200
TAAACCCGAC ATAAAGCGTG GGAATCTCAC TCCTCAAGAA CAACTTTTAA 
250
TCCTTGAGCT CCATTCTAAA TGGGGTAATA GGTGGTCAAA AATTTCGAAG 
300
TATTTACCAG GAAGAACAGA CAACGATATC AAAAACTACT GGAGAACTAG 
350
AGTCCAGAAA CAAGCACGCC AGCTCAACAT AGATTCCAAT AGCCACAAGT 
400
TCATAGAAGT TGTTCGTAGC TTTTGGTTTC CAAGACTGAT CAACGAGATT 
450
AAAGACAACT CATACACCAA CAATATTAAA GCTAATGCTC CTGATTTACT 
500
TGGACCAATT TTACGAGACA GCAAAGATTT GGGTTTCAAC AACATGGATT 
550
GTTCCACTTC CATGTCAGAA GATCTCAAGA AAACTTCACA ATTCATGGAT 
600
TTTTCTGATC TTGAAACCAC AATGTCCTTG GAAGGATCAC GAGGGGGTAG 
650
TAGTCAATGT GTGAGTGAGG TTTATAGCTC CTTCCCTTGC CTAGAGGAGG 
700
AGTACATGGT GGCCGTTATG GGCAGTTCAG ACATTTCAGC ATTGCATGAT 
750
TGTCACGTGG CTGATTCCAA GTACGAGGAT GATGTGACAC AAGATCTAAT 
800
GTGGAACATG GATGACATTT GGCAGTTTAA CGAGTATGCA CACTTTAATT 
850
AG
900

>AT1G25340.1 longest ORF length:283
MSNITKKKCN GNEEGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS 
50
GLKRAGKSCR LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKISK 
100
YLPGRTDNDI KNYWRTRVQK QARQLNIDSN SHKFIEVVRS FWFPRLINEI 
150
KDNSYTNNIK ANAPDLLGPI LRDSKDLGFN NMDCSTSMSE DLKKTSQFMD 
200
FSDLETTMSL EGSRGGSSQC VSEVYSSFPC LEEEYMVAVM GSSDISALHD 
250
CHVADSKYED DVTQDLMWNM DDIWQFNEYA HFN
300