fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G25340 ATMYB116 myb domain protein 116 (.1.2)

>AT1G25340.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 555, 777
EcoRV GAT|ATC 310
SacI GAGCT|C 241
StyI C|C[AT][AT]GG 64, 611
XhoI C|TCGAG 73


Click here to view TAIR data

>AT1G25340.2 length:837
ATGTCAAATA TAACAAAGAA GAAGTGTAAT GGAAATGAAG AGGGTGCAGA 
50
GCAGAGGAAA GGGCCTTGGA CACTCGAGGA AGACACTCTT CTCACCAATT 
100
ACATTTCCCA TAACGGTGAA GGCCGATGGA ATCTGCTCGC TAAATCTTCT 
150
GGAAAAAGTT GTAGATTGAG ATGGTTGAAT TACCTTAAAC CCGACATAAA 
200
GCGTGGGAAT CTCACTCCTC AAGAACAACT TTTAATCCTT GAGCTCCATT 
250
CTAAATGGGG TAATAGGTGG TCAAAAATTT CGAAGTATTT ACCAGGAAGA 
300
ACAGACAACG ATATCAAAAA CTACTGGAGA ACTAGAGTCC AGAAACAAGC 
350
ACGCCAGCTC AACATAGATT CCAATAGCCA CAAGTTCATA GAAGTTGTTC 
400
GTAGCTTTTG GTTTCCAAGA CTGATCAACG AGATTAAAGA CAACTCATAC 
450
ACCAACAATA TTAAAGCTAA TGCTCCTGAT TTACTTGGAC CAATTTTACG 
500
AGACAGCAAA GATTTGGGTT TCAACAACAT GGATTGTTCC ACTTCCATGT 
550
CAGAAGATCT CAAGAAAACT TCACAATTCA TGGATTTTTC TGATCTTGAA 
600
ACCACAATGT CCTTGGAAGG ATCACGAGGG GGTAGTAGTC AATGTGTGAG 
650
TGAGGTTTAT AGCTCCTTCC CTTGCCTAGA GGAGGAGTAC ATGGTGGCCG 
700
TTATGGGCAG TTCAGACATT TCAGCATTGC ATGATTGTCA CGTGGCTGAT 
750
TCCAAGTACG AGGATGATGT GACACAAGAT CTAATGTGGA ACATGGATGA 
800
CATTTGGCAG TTTAACGAGT ATGCACACTT TAATTAG
850

>AT1G25340.2 longest ORF length:278
MSNITKKKCN GNEEGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS 
50
GKSCRLRWLN YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKISKYLPGR 
100
TDNDIKNYWR TRVQKQARQL NIDSNSHKFI EVVRSFWFPR LINEIKDNSY 
150
TNNIKANAPD LLGPILRDSK DLGFNNMDCS TSMSEDLKKT SQFMDFSDLE 
200
TTMSLEGSRG GSSQCVSEVY SSFPCLEEEY MVAVMGSSDI SALHDCHVAD 
250
SKYEDDVTQD LMWNMDDIWQ FNEYAHFN
300