fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G25560 EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1)

>AT1G25560.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 1018
HindIII A|AGCTT 196
HpaI GTT|AAC 502
NotI GC|GGCCGC 352
PvuII CAG|CTG 9
SacI GAGCT|C 251
StyI C|C[AT][AT]GG 803


Click here to view TAIR data

>AT1G25560.1 length:1086
ATGGAATACA GCTGTGTAGA CGACAGTAGT ACAACGTCAG AATCTCTCTC 
50
CATCTCTACT ACTCCAAAGC CGACAACGAC GACGGAGAAG AAACTCTCTT 
100
CTCCGCCGGC GACGTCGATG CGTCTCTACA GAATGGGAAG CGGCGGAAGC 
150
AGCGTCGTTT TGGATTCAGA GAACGGCGTC GAGACCGAGT CACGTAAGCT 
200
TCCTTCGTCG AAATATAAAG GCGTTGTGCC TCAGCCTAAC GGAAGATGGG 
250
GAGCTCAGAT TTACGAGAAG CATCAGCGAG TTTGGCTCGG TACTTTCAAC 
300
GAGGAAGAAG AAGCTGCGTC TTCTTACGAC ATCGCCGTGA GGAGATTCCG 
350
CGGCCGCGAC GCCGTCACTA ACTTCAAATC TCAAGTTGAT GGAAACGACG 
400
CCGAATCGGC TTTTCTTGAC GCTCATTCTA AAGCTGAGAT CGTGGATATG 
450
TTGAGGAAAC ACACTTACGC CGATGAGTTT GAGCAGAGTA GACGGAAGTT 
500
TGTTAACGGC GACGGAAAAC GCTCTGGGTT GGAGACGGCG ACGTACGGAA 
550
ACGACGCTGT TTTGAGAGCG CGTGAGGTTT TGTTCGAGAA GACTGTTACG 
600
CCGAGCGACG TCGGGAAGCT GAACCGTTTA GTGATACCGA AACAACACGC 
650
GGAGAAGCAT TTTCCGTTAC CGGCGATGAC GACGGCGATG GGGATGAATC 
700
CGTCTCCGAC GAAAGGCGTT TTGATTAACT TGGAAGATAG AACAGGGAAA 
750
GTGTGGCGGT TCCGTTACAG TTACTGGAAC AGCAGTCAAA GTTACGTGTT 
800
GACCAAGGGC TGGAGCCGGT TCGTTAAAGA GAAGAATCTT CGAGCCGGTG 
850
ATGTGGTTTG TTTCGAGAGA TCAACCGGAC CAGACCGGCA ATTGTATATC 
900
CACTGGAAAG TCCGGTCTAG TCCGGTTCAG ACTGTGGTTA GGCTATTCGG 
950
AGTCAACATT TTCAATGTGA GTAACGAGAA ACCAAACGAC GTCGCAGTAG 
1000
AGTGTGTTGG CAAGAAGAGA TCTCGGGAAG ATGATTTGTT TTCGTTAGGG 
1050
TGTTCCAAGA AGCAGGCGAT TATCAACATC TTGTGA
1100

>AT1G25560.1 longest ORF length:361
MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS 
50
SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN 
100
EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM 
150
LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT 
200
PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK 
250
VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI 
300
HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG 
350
CSKKQAIINI L
400