fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G26260 CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3)

>AT1G26260.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 373
BglII A|GATCT 759
PstI CTGCA|G 233
PvuII CAG|CTG 1148
StyI C|C[AT][AT]GG 509


Click here to view TAIR data

>AT1G26260.2 length:1173
ATGAGTGACA AAGACGAGTT TGCCGCAAAG AAGAAGGATT TGGTCAATAC 
50
GCCAGTGGAT TTGTATCCTC CGGAGAATCC AATGTTGGGT CCTTCTCCGA 
100
TGATGGATTC ATTCAGAGAA ACTCTTTGGC ATGATGGTGG TTTCAATGTC 
150
CACACAGATG CAGACACTTC CTTTAGAGGT AATAATAATA TTGATATACC 
200
TCTTGAAATG GGTTGGAATA TGGCTCAGTT CCCTGCAGAT TCAGGATTCA 
250
TTGAGCGTGC TGCAAAGTTT TCTTTTTTTG GATGTGGTGA AATGATGATG 
300
AACCAACAAC AATCATCTCT TGGAGTTCCA GATTCAACTG GCTTGTTTCT 
350
TCAAGATACA CAGATTCCTA GTGGATCCAA ACTAGATAAT GGTCCTCTTA 
400
CTGATGCATC TAAGTTAGTG AAAGAGAGAT CGATTAATAA TGTATCAGAG 
450
GATTCTCAAT CTAGTGGAGG TAATGGTCAT GATGATGCTA AGTGTGGGCA 
500
AACATCTTCC AAGGGGTTTA GTAGTAAGAA GAGGAAAAGA ATTGGGAAGG 
550
ATTGTGAAGA AGAAGAAGAT AAAAAGCAAA AGGATGAGCA AAGTCCAACT 
600
TCAAATGCGA ACAAGACAAA CAGTGAGAAG CAACCTTCTG ATTCTTTAAA 
650
GGATGGGTAT ATTCACATGA GGGCACGAAG AGGCCAGGCT ACTAATAGTC 
700
ACAGTCTTGC TGAAAGAGTA AGAAGAGAAA AAATCAGTGA AAGGATGAAG 
750
TTCTTGCAAG ATCTTGTGCC AGGTTGCGAC AAGGTGACTG GTAAGGCAGT 
800
TATGCTCGAT GAAATCATTA ACTATGTGCA ATCACTTCAA TGCCAAATCG 
850
AGTTTTTATC GATGAAACTT TCGGCTGTGA ATCCTGTGCT CGATTTTAAC 
900
CTCGAAAGCC TCCTTGCAAA AGATGCTCTT CAATCATCTG CACCGACATT 
950
TCCCCACAAC ATGTCGATGC TTTATCCTCC TGTATCGTAT CTCTCTCAAA 
1000
CAGGATTCAT GCAACCGAAC ATTTCCTCAA TGTCGCTATT GAGTGGAGGA 
1050
TTAAAACGGC AGGAAACACA TGGATATGAA AGTGATCACC ACAATCTTGT 
1100
CCACATGAAC CATGAAACCG GCACTGCACC TGATCATGAA GATACAACAG 
1150
CTGACATGAA GGTGGAGCCG TAG
1200

>AT1G26260.2 longest ORF length:390
MSDKDEFAAK KKDLVNTPVD LYPPENPMLG PSPMMDSFRE TLWHDGGFNV 
50
HTDADTSFRG NNNIDIPLEM GWNMAQFPAD SGFIERAAKF SFFGCGEMMM 
100
NQQQSSLGVP DSTGLFLQDT QIPSGSKLDN GPLTDASKLV KERSINNVSE 
150
DSQSSGGNGH DDAKCGQTSS KGFSSKKRKR IGKDCEEEED KKQKDEQSPT 
200
SNANKTNSEK QPSDSLKDGY IHMRARRGQA TNSHSLAERV RREKISERMK 
250
FLQDLVPGCD KVTGKAVMLD EIINYVQSLQ CQIEFLSMKL SAVNPVLDFN 
300
LESLLAKDAL QSSAPTFPHN MSMLYPPVSY LSQTGFMQPN ISSMSLLSGG 
350
LKRQETHGYE SDHHNLVHMN HETGTAPDHE DTTADMKVEP 
400