fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G26260 CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3)

>AT1G26260.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 220
BglII A|GATCT 606
PvuII CAG|CTG 995
StyI C|C[AT][AT]GG 356


Click here to view TAIR data

>AT1G26260.3 length:1020
ATGAGTGACA AAGACGAGTT TGCCGCAAAG AAGAAGGATT TGGTCAATAC 
50
GCCAGTGGAT TTGTATCCTC CGGAGAATCC AATGTTGGGT CCTTCTCCGA 
100
TGATGGATTC ATTCAGAGAA ACTCTTTGGC ATGATGGTGG TTTCAATGTC 
150
CACACAGATG CAGACACTTC CTTTAGAGAT TCAACTGGCT TGTTTCTTCA 
200
AGATACACAG ATTCCTAGTG GATCCAAACT AGATAATGGT CCTCTTACTG 
250
ATGCATCTAA GTTAGTGAAA GAGAGATCGA TTAATAATGT ATCAGAGGAT 
300
TCTCAATCTA GTGGAGGTAA TGGTCATGAT GATGCTAAGT GTGGGCAAAC 
350
ATCTTCCAAG GGGTTTAGTA GTAAGAAGAG GAAAAGAATT GGGAAGGATT 
400
GTGAAGAAGA AGAAGATAAA AAGCAAAAGG ATGAGCAAAG TCCAACTTCA 
450
AATGCGAACA AGACAAACAG TGAGAAGCAA CCTTCTGATT CTTTAAAGGA 
500
TGGGTATATT CACATGAGGG CACGAAGAGG CCAGGCTACT AATAGTCACA 
550
GTCTTGCTGA AAGAGTAAGA AGAGAAAAAA TCAGTGAAAG GATGAAGTTC 
600
TTGCAAGATC TTGTGCCAGG TTGCGACAAG GTGACTGGTA AGGCAGTTAT 
650
GCTCGATGAA ATCATTAACT ATGTGCAATC ACTTCAATGC CAAATCGAGT 
700
TTTTATCGAT GAAACTTTCG GCTGTGAATC CTGTGCTCGA TTTTAACCTC 
750
GAAAGCCTCC TTGCAAAAGA TGCTCTTCAA TCATCTGCAC CGACATTTCC 
800
CCACAACATG TCGATGCTTT ATCCTCCTGT ATCGTATCTC TCTCAAACAG 
850
GATTCATGCA ACCGAACATT TCCTCAATGT CGCTATTGAG TGGAGGATTA 
900
AAACGGCAGG AAACACATGG ATATGAAAGT GATCACCACA ATCTTGTCCA 
950
CATGAACCAT GAAACCGGCA CTGCACCTGA TCATGAAGAT ACAACAGCTG 
1000
ACATGAAGGT GGAGCCGTAG 
1050

>AT1G26260.3 longest ORF length:339
MSDKDEFAAK KKDLVNTPVD LYPPENPMLG PSPMMDSFRE TLWHDGGFNV 
50
HTDADTSFRD STGLFLQDTQ IPSGSKLDNG PLTDASKLVK ERSINNVSED 
100
SQSSGGNGHD DAKCGQTSSK GFSSKKRKRI GKDCEEEEDK KQKDEQSPTS 
150
NANKTNSEKQ PSDSLKDGYI HMRARRGQAT NSHSLAERVR REKISERMKF 
200
LQDLVPGCDK VTGKAVMLDE IINYVQSLQC QIEFLSMKLS AVNPVLDFNL 
250
ESLLAKDALQ SSAPTFPHNM SMLYPPVSYL SQTGFMQPNI SSMSLLSGGL 
300
KRQETHGYES DHHNLVHMNH ETGTAPDHED TTADMKVEP
350