Locus |
Common name |
Short description |
AT1G26790 |
AtDof1,3 |
Dof-type zinc finger DNA-binding family protein (.1) |
>AT1G26790.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
835, 864 |
AccII(FnuDII)
| CG|CG |
847, 1043 |
AciI
| C|CGC |
507, 1042 |
AclI
| AA|CGTT |
460 |
AflII
| C|TTAAG |
271 |
AflIII
| A|CPuPyGT |
40, 883 |
AgeI
| A|CCGGT |
141, 855 |
AluI
| AG|CT |
33, 273, 623, 644, 959, 1064, 1081 |
AlwNI
| CAGNNN|CTG |
586 |
ApoI
| Pu|AATTPy |
436, 1060 |
AvaII
| G|G[AT]CC |
505 |
BamHI
| G|GATCC |
517 |
BfaI
| C|TAG |
813 |
BglI
| GCCNNNN|NGGC |
788 |
BglII
| A|GATCT |
1162 |
BsaJI
| C|CNNGG |
602, 747, 787, 1154 |
BsaWI
| [AT]|CCGG[AT] |
111, 141, 855 |
BslI
| CCNNNNN|NNGG |
838 |
BspHI
| T|CATGA |
150, 918 |
BsrFI
| Pu|CCGGPy |
141, 855 |
BsrI
| ACTGGN| |
839 |
BssKI
| |CCNGG |
533 |
BstAPI
| GCANNNN|NTGC |
1146 |
BstF5I
| GGATGNN| |
566 |
BstUI
| CG|CG |
847, 1043 |
BstYI
| Pu|GATCPy |
517, 1162 |
BtgI
| C|CPuPyGG |
1154 |
BtrI
| CAC|GTC |
473 |
Cac8I
| GCN|NGC |
962, 1137 |
Cfr10I
| [AG]|CCGG[TC] |
141, 855 |
DdeI
| C|TNAG |
31, 313, 542, 642, 673, 682, 976 |
DpnI
| GA-CH3|TC |
152, 340, 516, 526, 1161 |
DpnII
| |GATC |
152, 340, 516, 526, 1161 |
EcoRI
| G|AATTC |
1060 |
Fnu4HI
| GC|NGC |
844, 1096, 1149 |
HaeIII
| GG|CC |
545, 678, 789 |
HhaI
| GCG|C |
423, 846 |
HinP1I
| G|CGC |
423, 846 |
HincII
| GTPy|PuAC |
463 |
HindIII
| A|AGCTT |
645, 960 |
HinfI
| G|ANTC |
186, 297, 398, 638, 651, 660, 972, 1108 |
HpaI
| GTT|AAC |
463 |
HpaII
| C|CGG |
110, 140, 533, 854 |
Hpy188I
| TCN|GA |
312, 357, 410, 576, 600, 657, 977, 1174 |
Hpy99I
| CG[AT]CG| |
549 |
HpyCH4III
| ACN|GT |
319, 924 |
HpyCH4IV
| A|CGT |
38, 459, 472, 1121 |
HpyCH4V
| TG|CA |
416, 588, 1134, 1147 |
MboI
| |GATC |
152, 340, 516, 526, 1161 |
MseI
| T|TAA |
114, 270, 288, 462, 927, 1128 |
MspA1I
| C[AC]G|C[GT]G |
509 |
MspI
| C|CGG |
110, 140, 533, 854 |
MwoI
| GCNNNNN|NNGC |
788, 1146 |
N.BstNBI
| GAGTCNNNN|N |
302, 656 |
NciI
| CC|[CG]GG |
533 |
NcoI
| C|CATGG |
1154 |
NlaIII
| CATG| |
19, 149, 173, 232, 405, 520, 826, 882, 917, 1016, 1153 |
NlaIV
| GGN|NCC |
517 |
NspI
| PuCATG|Py |
827, 883 |
PciI
| A|CATGT |
883 |
PstI
| CTGCA|G |
1148 |
RsaI
| GT|AC |
583, 1031 |
Sau3AI
| |GATC |
152, 340, 516, 526, 1161 |
Sau96I
| G|GNCC |
505 |
ScrFI
| CC|NGG |
533 |
SfcI
| C|TPuPyAG |
483, 1148 |
SmlI
| C|TPyPuAG |
95, 271 |
StuI
| AGG|CCT |
679 |
StyI
| C|C[AT][AT]GG |
747, 787, 1154 |
Taqƒ¿I
| T|CGA |
223, 648, 870 |
TfiI
| G|A[AT]TC |
186, 398, 638, 972, 1108 |
TseI
| G|C[AT]GC |
844, 1096, 1149 |
Tsp45I
| |GT[CG]AC |
475 |
Tsp509I
| |AATT |
44, 117, 133, 349, 435, 614, 1059 |
TspRI
| NNCA[CG]TGNN| |
322 |
Click here to view TAIR data
>AT1G26790.1 length:1191
ATGTGGCTCT CTCATCTCTT CATGTCCCTC TCTAAGCTGA CGTGTAATTT | 50 |
CTCCATTTTC TCTGTCTTTA TGGCTTGTGG CTCTATTGGT ATGTCTCAAG | 100 |
TTAGAGATAC TCCGGTTAAA TTGTTTGGCT GGACAATTAC ACCGGTTTCT | 150 |
CATGATCCAT ACTCTTCTTC GTCCCATGTT CTTCCTGATT CTTCCTCGTC | 200 |
TTCCTCGTCT TCTTCTCTAT CACTTCGACC ACACATGATG AATAACCAAT | 250 |
CTGTTACTGA CAATACAAGT CTTAAGCTGT CATCTAATCT TAACAACGAG | 300 |
TCAAAAGAAA CATCTGAGAA CAGTGATGAC CAACACAGCG AGATCACAAC | 350 |
AATTACATCG GAAGAAGAGA AAACAACTGA ACTGAAGAAA CCAGACAAGA | 400 |
TTCTTCCATG TCCGAGATGC AACAGCGCAG ACACCAAATT CTGTTACTAC | 450 |
AACAACTACA ACGTTAACCA GCCACGTCAC TTCTGTAGAA AATGCCAGAG | 500 |
GTATTGGACC GCTGGTGGAT CCATGAGGAT CGTCCCGGTT GGCTCAGGCC | 550 |
GTCGCAAGAA CAAGGGATGG GTTTCTTCAG ACCAGTACCT GCACATCACT | 600 |
TCCGAGGATA CTGACAATTA CAATAGCTCC TCAACAAAGA TTCTAAGCTT | 650 |
CGAGTCTTCG GACTCTTTGG TAACTGAGAG GCCTAAGCAT CAATCAAACG | 700 |
AAGTGAAGAT AAACGCTGAA CCTGTTTCAC AAGAACCCAA CAACTTCCAA | 750 |
GGGTTACTTC CTCCCCAAGC ATCCCCTGTT TCGCCTCCTT GGCCTTACCA | 800 |
ATACCCTCCA AACCCTAGTT TCTACCACAT GCCCGTCTAC TGGGGCTGCG | 850 |
CGATACCGGT TTGGTCTACC CTCGACACTT CTACATGTCT TGGGAAAAGG | 900 |
ACAAGAGACG AAACTTCTCA TGAAACTGTT AAAGAGAGTA AAAATGCTTT | 950 |
TGAGAGAACA AGCTTGCTTT TGGAATCTCA GAGCATCAAA AATGAAACAA | 1000 |
GTATGGCTAC AAATAACCAT GTGTGGTATC CAGTACCGAT GACCCGCGAG | 1050 |
AAGACACAAG AATTCAGCTT TTTCAGTAAT GGAGCTGAAA CAAAGAGCAG | 1100 |
CAACAACAGA TTCGTCCCTG AAACGTATCT TAACCTGCAA GCAAACCCTG | 1150 |
CAGCCATGGC AAGATCTATG AACTTCAGAG AGAGCATATA A | 1200 |
>AT1G26790.1 longest ORF length:396
MWLSHLFMSL SKLTCNFSIF SVFMACGSIG MSQVRDTPVK LFGWTITPVS | 50 |
HDPYSSSSHV LPDSSSSSSS SSLSLRPHMM NNQSVTDNTS LKLSSNLNNE | 100 |
SKETSENSDD QHSEITTITS EEEKTTELKK PDKILPCPRC NSADTKFCYY | 150 |
NNYNVNQPRH FCRKCQRYWT AGGSMRIVPV GSGRRKNKGW VSSDQYLHIT | 200 |
SEDTDNYNSS STKILSFESS DSLVTERPKH QSNEVKINAE PVSQEPNNFQ | 250 |
GLLPPQASPV SPPWPYQYPP NPSFYHMPVY WGCAIPVWST LDTSTCLGKR | 300 |
TRDETSHETV KESKNAFERT SLLLESQSIK NETSMATNNH VWYPVPMTRE | 350 |
KTQEFSFFSN GAETKSSNNR FVPETYLNLQ ANPAAMARSM NFRESI | 400 |
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