fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G26790 AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1)

>AT1G26790.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 835, 864
AccII(FnuDII) CG|CG 847, 1043
AciI C|CGC 507, 1042
AclI AA|CGTT 460
AflII C|TTAAG 271
AflIII A|CPuPyGT 40, 883
AgeI A|CCGGT 141, 855
AluI AG|CT 33, 273, 623, 644, 959, 1064, 1081
AlwNI CAGNNN|CTG 586
ApoI Pu|AATTPy 436, 1060
AvaII G|G[AT]CC 505
BamHI G|GATCC 517
BfaI C|TAG 813
BglI GCCNNNN|NGGC 788
BglII A|GATCT 1162
BsaJI C|CNNGG 602, 747, 787, 1154
BsaWI [AT]|CCGG[AT] 111, 141, 855
BslI CCNNNNN|NNGG 838
BspHI T|CATGA 150, 918
BsrFI Pu|CCGGPy 141, 855
BsrI ACTGGN| 839
BssKI |CCNGG 533
BstAPI GCANNNN|NTGC 1146
BstF5I GGATGNN| 566
BstUI CG|CG 847, 1043
BstYI Pu|GATCPy 517, 1162
BtgI C|CPuPyGG 1154
BtrI CAC|GTC 473
Cac8I GCN|NGC 962, 1137
Cfr10I [AG]|CCGG[TC] 141, 855
DdeI C|TNAG 31, 313, 542, 642, 673, 682, 976
DpnI GA-CH3|TC 152, 340, 516, 526, 1161
DpnII |GATC 152, 340, 516, 526, 1161
EcoRI G|AATTC 1060
Fnu4HI GC|NGC 844, 1096, 1149
HaeIII GG|CC 545, 678, 789
HhaI GCG|C 423, 846
HinP1I G|CGC 423, 846
HincII GTPy|PuAC 463
HindIII A|AGCTT 645, 960
HinfI G|ANTC 186, 297, 398, 638, 651, 660, 972, 1108
HpaI GTT|AAC 463
HpaII C|CGG 110, 140, 533, 854
Hpy188I TCN|GA 312, 357, 410, 576, 600, 657, 977, 1174
Hpy99I CG[AT]CG| 549
HpyCH4III ACN|GT 319, 924
HpyCH4IV A|CGT 38, 459, 472, 1121
HpyCH4V TG|CA 416, 588, 1134, 1147
MboI |GATC 152, 340, 516, 526, 1161
MseI T|TAA 114, 270, 288, 462, 927, 1128
MspA1I C[AC]G|C[GT]G 509
MspI C|CGG 110, 140, 533, 854
MwoI GCNNNNN|NNGC 788, 1146
N.BstNBI GAGTCNNNN|N 302, 656
NciI CC|[CG]GG 533
NcoI C|CATGG 1154
NlaIII CATG| 19, 149, 173, 232, 405, 520, 826, 882, 917, 1016, 1153
NlaIV GGN|NCC 517
NspI PuCATG|Py 827, 883
PciI A|CATGT 883
PstI CTGCA|G 1148
RsaI GT|AC 583, 1031
Sau3AI |GATC 152, 340, 516, 526, 1161
Sau96I G|GNCC 505
ScrFI CC|NGG 533
SfcI C|TPuPyAG 483, 1148
SmlI C|TPyPuAG 95, 271
StuI AGG|CCT 679
StyI C|C[AT][AT]GG 747, 787, 1154
Taqƒ¿I T|CGA 223, 648, 870
TfiI G|A[AT]TC 186, 398, 638, 972, 1108
TseI G|C[AT]GC 844, 1096, 1149
Tsp45I |GT[CG]AC 475
Tsp509I |AATT 44, 117, 133, 349, 435, 614, 1059
TspRI NNCA[CG]TGNN| 322


Click here to view TAIR data

>AT1G26790.1 length:1191
ATGTGGCTCT CTCATCTCTT CATGTCCCTC TCTAAGCTGA CGTGTAATTT 
50
CTCCATTTTC TCTGTCTTTA TGGCTTGTGG CTCTATTGGT ATGTCTCAAG 
100
TTAGAGATAC TCCGGTTAAA TTGTTTGGCT GGACAATTAC ACCGGTTTCT 
150
CATGATCCAT ACTCTTCTTC GTCCCATGTT CTTCCTGATT CTTCCTCGTC 
200
TTCCTCGTCT TCTTCTCTAT CACTTCGACC ACACATGATG AATAACCAAT 
250
CTGTTACTGA CAATACAAGT CTTAAGCTGT CATCTAATCT TAACAACGAG 
300
TCAAAAGAAA CATCTGAGAA CAGTGATGAC CAACACAGCG AGATCACAAC 
350
AATTACATCG GAAGAAGAGA AAACAACTGA ACTGAAGAAA CCAGACAAGA 
400
TTCTTCCATG TCCGAGATGC AACAGCGCAG ACACCAAATT CTGTTACTAC 
450
AACAACTACA ACGTTAACCA GCCACGTCAC TTCTGTAGAA AATGCCAGAG 
500
GTATTGGACC GCTGGTGGAT CCATGAGGAT CGTCCCGGTT GGCTCAGGCC 
550
GTCGCAAGAA CAAGGGATGG GTTTCTTCAG ACCAGTACCT GCACATCACT 
600
TCCGAGGATA CTGACAATTA CAATAGCTCC TCAACAAAGA TTCTAAGCTT 
650
CGAGTCTTCG GACTCTTTGG TAACTGAGAG GCCTAAGCAT CAATCAAACG 
700
AAGTGAAGAT AAACGCTGAA CCTGTTTCAC AAGAACCCAA CAACTTCCAA 
750
GGGTTACTTC CTCCCCAAGC ATCCCCTGTT TCGCCTCCTT GGCCTTACCA 
800
ATACCCTCCA AACCCTAGTT TCTACCACAT GCCCGTCTAC TGGGGCTGCG 
850
CGATACCGGT TTGGTCTACC CTCGACACTT CTACATGTCT TGGGAAAAGG 
900
ACAAGAGACG AAACTTCTCA TGAAACTGTT AAAGAGAGTA AAAATGCTTT 
950
TGAGAGAACA AGCTTGCTTT TGGAATCTCA GAGCATCAAA AATGAAACAA 
1000
GTATGGCTAC AAATAACCAT GTGTGGTATC CAGTACCGAT GACCCGCGAG 
1050
AAGACACAAG AATTCAGCTT TTTCAGTAAT GGAGCTGAAA CAAAGAGCAG 
1100
CAACAACAGA TTCGTCCCTG AAACGTATCT TAACCTGCAA GCAAACCCTG 
1150
CAGCCATGGC AAGATCTATG AACTTCAGAG AGAGCATATA A
1200

>AT1G26790.1 longest ORF length:396
MWLSHLFMSL SKLTCNFSIF SVFMACGSIG MSQVRDTPVK LFGWTITPVS 
50
HDPYSSSSHV LPDSSSSSSS SSLSLRPHMM NNQSVTDNTS LKLSSNLNNE 
100
SKETSENSDD QHSEITTITS EEEKTTELKK PDKILPCPRC NSADTKFCYY 
150
NNYNVNQPRH FCRKCQRYWT AGGSMRIVPV GSGRRKNKGW VSSDQYLHIT 
200
SEDTDNYNSS STKILSFESS DSLVTERPKH QSNEVKINAE PVSQEPNNFQ 
250
GLLPPQASPV SPPWPYQYPP NPSFYHMPVY WGCAIPVWST LDTSTCLGKR 
300
TRDETSHETV KESKNAFERT SLLLESQSIK NETSMATNNH VWYPVPMTRE 
350
KTQEFSFFSN GAETKSSNNR FVPETYLNLQ ANPAAMARSM NFRESI
400