fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G26960 ATHB23 homeobox protein 23 (.1)

>AT1G26960.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BstAPI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, TspRI, Tth111I, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AflII C|TTAAG 403
AflIII A|CPuPyGT 701
AluI AG|CT 22, 261, 297, 301, 358, 378, 462, 469
ApoI Pu|AATTPy 39, 651
AvrII C|CTAGG 609
BalI TGG|CCA 736
BanII GPuGCPy|C 359
BfaI C|TAG 110, 155, 245, 299, 324, 608
BglII A|GATCT 121
BlpI GC|TNAGC 21
BsaJI C|CNNGG 102, 311, 609, 739
BsaWI [AT]|CCGG[AT] 585
BsiHKAI G[AT]GC[AT]|C 359
Bsp1286I G[GAT]GC[CAT]|C 359
BspDI AT|CGAT 592
BssSI C|TCGTG 305
BstBI TT|CGAA 415
BstYI Pu|GATCPy 121, 193
BtgI C|CPuPyGG 102, 739
Cac8I GCN|NGC 300
ClaI AT|CGAT 592
DdeI C|TNAG 20, 196, 423, 472
DpnI GA-CH3|TC 74, 120, 192, 284, 363, 537, 589
DpnII |GATC 74, 120, 192, 284, 363, 537, 589
EaeI Py|GGCCPu 736
EcoRI G|AATTC 651
Fnu4HI GC|NGC 377
HaeIII GG|CC 579, 611, 735
HindIII A|AGCTT 463
HinfI G|ANTC 279, 507
HpaII C|CGG 584
Hpy188I TCN|GA 183, 282, 424, 518, 647, 660
HpyCH4III ACN|GT 688
HpyCH4IV A|CGT 135
HpyCH4V TG|CA 138, 318, 636
MboI |GATC 74, 120, 192, 284, 363, 537, 589
MfeI C|AATTG 235, 762
MscI TGG|CCA 736
MseI T|TAA 402
MspI C|CGG 584
MwoI GCNNNNN|NNGC 749
NcoI C|CATGG 102, 739
NheI G|CTAGC 300
NlaIII CATG| 101, 226, 397, 540, 700, 738
NlaIV GGN|NCC 344
NspI PuCATG|Py 398, 701
PciI A|CATGT 701
SacI GAGCT|C 359
Sau3AI |GATC 74, 120, 192, 284, 363, 537, 589
SmlI C|TPyPuAG 382, 403
SspI AAT|ATT 179
StyI C|C[AT][AT]GG 102, 311, 609, 739
Taqƒ¿I T|CGA 286, 361, 414, 591
TfiI G|A[AT]TC 279, 507
TseI G|C[AT]GC 377
Tsp45I |GT[CG]AC 547, 571
Tsp509I |AATT 38, 234, 291, 331, 411, 600, 650, 712, 761
XbaI T|CTAGA 156
XmnI GAANN|NNTTC 443


Click here to view TAIR data

>AT1G26960.1 length:768
ATGTCTTGTA ATAATAATGG CTTAGCTTTC TTCCCTGAAA ATTTCAGTCT 
50
CCAAAACCAT CACCAAGAAG AAGAAGATCA CCCTCAACTT CTTCAAGACT 
100
TCCATGGGTT TCTAGGTAAA AGATCTCCAA TGAACAACGT GCAAGGGTTT 
150
TGTAATCTAG ATATGAACGG AGATGAAGAA TATTCAGACG ATGGATCTAA 
200
GATGGGAGAG AAGAAGAGGA GATTGAACAT GGAACAATTG AAGGCACTAG 
250
AGAAGGACTT TGAGCTTGGT AATAAACTTG AATCAGATCG AAAATTAGAG 
300
CTAGCTCGTG CCTTGGGATT GCAACCTAGA CAAATTGCTA TATGGTTCCA 
350
AAACAGAAGA GCTCGATCCA AAACCAAGCA GCTTGAGAAA GACTATGACA 
400
TGCTTAAGCG TCAATTCGAA AGTCTCAGAG ATGAGAACGA AGTTCTTCAA 
450
ACTCAAAATC AAAAGCTTCA AGCTCAGGTA ATGGCATTGA AAAGCAGAGA 
500
ACCAATAGAA TCAATCAATC TGAACAAAGA AACAGAAGGA TCATGTAGTG 
550
ACAGAAGTGA GAACATTTCT GGTGACATCA GGCCACCGGA GATCGATAGC 
600
CAATTCGCCC TAGGCCATCC ACCGACAACT ACAACGATGC AGTTTTTTCA 
650
GAATTCATCG TCAGAACAGA GAATGGTGAA AGAAGAGAAC AGTATCAGTA 
700
ACATGTTCTG TGGAATTGAT GACCAGTCTG GGTTCTGGCC ATGGCTTGAC 
750
CAGCAACAAT ACAATTGA
800

>AT1G26960.1 longest ORF length:255
MSCNNNGLAF FPENFSLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF 
50
CNLDMNGDEE YSDDGSKMGE KKRRLNMEQL KALEKDFELG NKLESDRKLE 
100
LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ 
150
TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS 
200
QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD 
250
QQQYN
300