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| Locus | Common name | Short description |
| AT1G27050 | ATHB54 | homeobox protein 54 (.1) |
>AT1G27050.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstEII, BstF5I, BstNI, BstZ17I, Bsu36I, BtrI, BtsI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeIII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, , NdeI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 808 |
| AccII(FnuDII) | CG|CG | 915 |
| AciI | C|CGC | 828, 874, 998, 1032, 1137, 1155 |
| AflIII | A|CPuPyGT | 772 |
| AluI | AG|CT | 95, 122, 176, 210, 300, 349, 369, 397, 401, 411, 561, 696, 824, 1053, 1305, 1363 |
| AlwNI | CAGNNN|CTG | 14, 143, 818 |
| ApoI | Pu|AATTPy | 519, 920 |
| BamHI | G|GATCC | 1233 |
| BanI | G|GPyPuCC | 945 |
| BanII | GPuGCPy|C | 96, 825 |
| BclI | T|GATCA | 131 |
| BfaI | C|TAG | 120, 236, 290, 302, 351, 399 |
| BglII | A|GATCT | 1073 |
| BlpI | GC|TNAGC | 410 |
| BsaAI | PyAC|GTPu | 771 |
| BsaHI | GPu|CGPyC | 808, 945 |
| BsaJI | C|CNNGG | 940 |
| BsiHKAI | G[AT]GC[AT]|C | 96, 825, 961 |
| BslI | CCNNNNN|NNGG | 205, 1185 |
| Bsp1286I | G[GAT]GC[CAT]|C | 96, 825, 961 |
| BspDI | AT|CGAT | 1198 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 945 |
| BsrFI | Pu|CCGGPy | 912, 932, 1008 |
| BsrGI | T|GTACA | 441 |
| BsrI | ACTGGN| | 425 |
| BssKI | |CCNGG | 692 |
| BstBI | TT|CGAA | 250, 924 |
| BstUI | CG|CG | 915 |
| BstXI | CCANNNNN|NTGG | 1211 |
| BstYI | Pu|GATCPy | 118, 794, 1073, 1233 |
| BtgI | C|CPuPyGG | 940 |
| Cac8I | GCN|NGC | 291, 400, 699, 823, 932 |
| Cfr10I | [AG]|CCGG[TC] | 912, 932, 1008 |
| ClaI | AT|CGAT | 1198 |
| DdeI | C|TNAG | 8, 409, 589, 747, 790 |
| DpnI | GA-CH3|TC | 117, 130, 220, 545, 722, 779, 793, 985, 1072, 1232 |
| DpnII | |GATC | 117, 130, 220, 545, 722, 779, 793, 985, 1072, 1232 |
| EcoRV | GAT|ATC | 1419, 1477 |
| Fnu4HI | GC|NGC | 308, 874, 1001, 1155 |
| HaeII | PuGCGC|Py | 945 |
| HhaI | GCG|C | 914, 944 |
| HinP1I | G|CGC | 914, 944 |
| HindIII | A|AGCTT | 1306 |
| HinfI | G|ANTC | 18, 265, 387, 507, 578, 677, 788, 1066, 1093, 1099, 1143, 1200 |
| HpaII | C|CGG | 692, 911, 931, 1007, 1427 |
| Hpy188I | TCN|GA | 9, 21, 41, 92, 709, 782, 791, 804, 957, 1096, 1376 |
| Hpy99I | CG[AT]CG| | 1228, 1288, 1300, 1432, 1472 |
| HpyCH4III | ACN|GT | 382, 470, 655, 685, 901, 1039, 1078 |
| HpyCH4IV | A|CGT | 165, 770, 807, 1286 |
| HpyCH4V | TG|CA | 145, 309, 570, 700 |
| KasI | G|GCGCC | 945 |
| MboI | |GATC | 117, 130, 220, 545, 722, 779, 793, 985, 1072, 1232 |
| MfeI | C|AATTG | 226 |
| MseI | T|TAA | 393, 477, 485, 731, 1371, 1446, 1483 |
| MslI | CAPyNN|NNPuTG | 383 |
| MspI | C|CGG | 692, 911, 931, 1007, 1427 |
| MwoI | GCNNNNN|NNGC | 308, 405, 569, 828, 1146, 1161 |
| N.BstNBI | GAGTCNNNN|N | 512, 1148 |
| NaeI | GCC|GGC | 932 |
| NarI | GG|CGCC | 945 |
| NciI | CC|[CG]GG | 692 |
| NcoI | C|CATGG | 940 |
| NgoMIV | G|CCGGC | 932 |
| NheI | G|CTAGC | 291, 400 |
| NlaIII | CATG| | 181, 939, 1337 |
| NlaIV | GGN|NCC | 335, 945, 1120, 1233 |
| PmlI | CAC|GTG | 771 |
| PstI | CTGCA|G | 310 |
| RsaI | GT|AC | 440, 467, 652 |
| SacI | GAGCT|C | 96, 825 |
| Sau3AI | |GATC | 117, 130, 220, 545, 722, 779, 793, 985, 1072, 1232 |
| ScrFI | CC|NGG | 692 |
| SfcI | C|TPuPyAG | 310 |
| SfoI | GGC|GCC | 945 |
| SgrAI | CPu|CCGGPyG | 913, 933, 1009 |
| SmlI | C|TPyPuAG | 415, 457 |
| StyI | C|C[AT][AT]GG | 940 |
| Taqƒ¿I | T|CGA | 249, 267, 372, 543, 863, 923, 975, 1063, 1068, 1132, 1197, 1301 |
| TfiI | G|A[AT]TC | 18, 578, 677, 1066, 1093, 1099, 1200 |
| TseI | G|C[AT]GC | 308 |
| Tsp45I | |GT[CG]AC | 385, 768, 810, 849, 904, 1171, 1260 |
| Tsp509I | |AATT | 225, 518, 841, 919, 1114, 1399 |
| TspRI | NNCA[CG]TGNN| | 16, 658 |
| XcmI | CCANNNNN|NNNNTGG | 1246 |
Click here to view TAIR data
>AT1G27050.1 length:1488
ATGGAAAACT CAGACACTGA TTCAGAAGTT TTCTTTTGGT TTCAGAACCA | 50 |
AAACCAAAAC CATAGCCATA AGTTTCCTTC TTCTTGTTTT CCTCCGAGCT | 100 |
CTCACTCTGC TTTTTATGGA TCTAGCTCAA TGATCAACAC AGAGACTGCA | 150 |
ACTATGGACG AAGAAGACGT ATGTGAGAGC TACATGATGC GTGAGATAAC | 200 |
CAAGAAACGG AAGCTAACAC CGATCCAATT GCGTTTACTA GAGGAGAGTT | 250 |
TCGAAGAAGA GAAAAGACTC GAACCAGACA GGAAACTCTG GCTAGCCGAG | 300 |
AAGCTAGGGC TGCAGCCAAG CCAAGTCGCT GTCTGGTTCC AAAACAGAAG | 350 |
AGCTAGATAC AAGACCAAAC AGCTCGAACA CGACTGTGAC TCTCTTAAAG | 400 |
CTAGCTATGC TAAGCTCAAG ACTGACTGGG ACATTCTCTT TGTACAAAAC | 450 |
CAAACCCTCA AGAGCAAGGT ACAGTTTCTT AATAGATTAA CAAGCCACTA | 500 |
TTTTCAAGAG TCTGTTCAAA ATTTTGATGA CACATTCAAA CAGGTCGATC | 550 |
TTCTCAAAGA GAAGCTGAAA ATGCAAGAGA ATCTTGAAAC TCAGTCTATT | 600 |
GAGAGGAAAA GACTTGGGGA AGAAGGTAGT TCGGTGAAAA GCGATAACAC | 650 |
GCAGTACAGT GAAGAAGAAG GTTTGGAGAA TCAATACAGT TTCCCGGAGC | 700 |
TTGCAGTTCT CGGATTTTAT TATGATCCAA CCTTAACTGC TTCAAATCTA | 750 |
AGACAAGAAC CTTTGAAAGT CACGTGTGCG GATCAGATGA CTCAGATCCA | 800 |
AATATCTGAC GTCACAGAAC CTGCGAGCTC CGCACATAAA AAAATTGAAG | 850 |
TGACACAGCG AAGTTCGAGT ATGAGCCGCA AGAGAGATAA ACCCTACACA | 900 |
AACCGTCACA CACCGGCGCG AATTTCGAAA CGCCGGCGAC CATGGGCGCC | 950 |
TTCGTCATCG GAGCACGATG AGATTATCGA CAAACCGATC ACCAAACCTC | 1000 |
CGCCGCCACC GGCGTTGGTA GTTATGGGAC TTCCCGCCAA CTGTTCAGTT | 1050 |
CTGGAGCTAA AATCTCGATT CGAGATCTAC GGTTCAATCT CCCGAATCCG | 1100 |
AATCCATAAA GACGGAATTG GCTCCGTTTC GTATCGAACC GCCGAGTCAG | 1150 |
CAGAAGCCGC CATTGCTGGT AGTCACGAGC CTTCTTTCGG TATCTCCATC | 1200 |
GATTCCAAAA AGTTGGAGGT GGTTTGGGCG ACGGATCCAT TGGTGAAGTG | 1250 |
GAAGGAAGGT GTGACGGCGG GAGAAGGAAA GGAGAGAACG TCGTCGTTTT | 1300 |
CGTCGAAGCT TTTACGACCT GTGATGCCTT TGAGAAAACA TGGGAGAAGC | 1350 |
AGTAGGTTAG CGTCAGCTAT TGTTAATCCG AGAAGTGATA ATACTAAAGG | 1400 |
AATTAGTGGA GATGGAGGGA TATCATCTCC GGCGACGACA AGTGAAGTTA | 1450 |
AACAGAGAAA TATAGTAACC TACGACGATA TCGTTTAA | 1500 |
>AT1G27050.1 longest ORF length:495
MENSDTDSEV FFWFQNQNQN HSHKFPSSCF PPSSHSAFYG SSSMINTETA | 50 |
TMDEEDVCES YMMREITKKR KLTPIQLRLL EESFEEEKRL EPDRKLWLAE | 100 |
KLGLQPSQVA VWFQNRRARY KTKQLEHDCD SLKASYAKLK TDWDILFVQN | 150 |
QTLKSKVQFL NRLTSHYFQE SVQNFDDTFK QVDLLKEKLK MQENLETQSI | 200 |
ERKRLGEEGS SVKSDNTQYS EEEGLENQYS FPELAVLGFY YDPTLTASNL | 250 |
RQEPLKVTCA DQMTQIQISD VTEPASSAHK KIEVTQRSSS MSRKRDKPYT | 300 |
NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV | 350 |
LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG SHEPSFGISI | 400 |
DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS | 450 |
SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT YDDIV | 500 |