Locus |
Common name |
Short description |
AT1G27370 |
SPL10 |
squamosa promoter binding protein-like 10 (.1.2.3.4) |
>AT1G27370.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, StyI, SwaI, Tsp45I, Tth111I, XbaI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
Acc65I
| G|GTACC |
345, 862 |
AccI
| GT|[AC][TG]AC |
222, 852 |
AccII(FnuDII)
| CG|CG |
519 |
AciI
| C|CGC |
518, 706, 1151 |
AluI
| AG|CT |
212, 334, 358, 543, 701, 911 |
ApoI
| Pu|AATTPy |
42, 106, 409, 453, 682, 768 |
AvaI
| C|PyCGPuG |
247, 340 |
AvaII
| G|G[AT]CC |
938 |
BanI
| G|GPyPuCC |
345, 862 |
BbvCI
| CC|TCAGC |
357 |
BclI
| T|GATCA |
47 |
BfaI
| C|TAG |
183, 383, 1173 |
BglII
| A|GATCT |
369, 838 |
BsaBI
| GATNN|NNATC |
572 |
BsaHI
| GPu|CGPyC |
737 |
BsaJI
| C|CNNGG |
28, 248, 285, 1139 |
BsiEI
| CGPuPy|CG |
786 |
BsiHKAI
| G[AT]GC[AT]|C |
1085 |
BslI
| CCNNNNN|NNGG |
440, 1032, 1161 |
BsmI
| GAATGCN| |
1046 |
BsoBI
| C|PyCGPuG |
247, 340 |
Bsp1286I
| G[GAT]GC[CAT]|C |
609, 1085 |
BspHI
| T|CATGA |
1071 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
345, 862 |
BsrI
| ACTGGN| |
35, 952 |
BssKI
| |CCNGG |
285, 317, 632 |
BstNI
| CC|[AT]GG |
285, 317, 632 |
BstUI
| CG|CG |
519 |
BstXI
| CCANNNNN|NTGG |
534 |
BstYI
| Pu|GATCPy |
369, 549, 838 |
BstZ17I
| GTA|TAC |
852 |
BtgI
| C|CPuPyGG |
28, 1139 |
Cac8I
| GCN|NGC |
215, 509, 578, 743 |
DdeI
| C|TNAG |
97, 149, 356, 562, 677, 909, 934, 998, 1049 |
DpnI
| GA-CH3|TC |
46, 368, 548, 785, 837, 1123 |
DpnII
| |GATC |
46, 368, 548, 785, 837, 1123 |
EaeI
| Py|GGCCPu |
1142 |
EcoRI
| G|AATTC |
768 |
Fnu4HI
| GC|NGC |
703, 898 |
HaeIII
| GG|CC |
629, 1055, 1141 |
HincII
| GTPy|PuAC |
222, 459, 1101 |
HinfI
| G|ANTC |
129, 291, 363, 461, 586, 1065, 1113 |
Hpy188I
| TCN|GA |
366, 402, 479, 503, 678, 771, 840, 908, 933, 1110, 1186 |
Hpy99I
| CG[AT]CG| |
639, 738 |
HpyCH4III
| ACN|GT |
653, 944, 1081 |
HpyCH4IV
| A|CGT |
637, 712 |
HpyCH4V
| TG|CA |
5, 260, 268, 510, 730 |
KpnI
| GGTAC|C |
345, 862 |
MboI
| |GATC |
46, 368, 548, 785, 837, 1123 |
MseI
| T|TAA |
828 |
MslI
| CAPyNN|NNPuTG |
728, 1138 |
MspA1I
| C[AC]G|C[GT]G |
359, 440 |
MwoI
| GCNNNNN|NNGC |
518, 743, 1054 |
N.BstNBI
| GAGTCNNNN|N |
591 |
NlaIII
| CATG| |
10, 49, 508, 668, 855, 1061, 1070 |
NlaIV
| GGN|NCC |
345, 665, 862 |
NspI
| PuCATG|Py |
509 |
PaeR7I
| C|TCGAG |
340 |
PflMI
| CCANNNN|NTGG |
1161 |
PspGI
| |CC[AT]GG |
285, 317, 632 |
PvuI
| CGAT|CG |
786 |
PvuII
| CAG|CTG |
359 |
RsaI
| GT|AC |
344, 861 |
SalI
| G|TCGAC |
222 |
Sau3AI
| |GATC |
46, 368, 548, 785, 837, 1123 |
Sau96I
| G|GNCC |
938 |
ScrFI
| CC|NGG |
285, 317, 632 |
SfcI
| C|TPuPyAG |
134, 1080 |
SmlI
| C|TPyPuAG |
340 |
SpeI
| A|CTAGT |
184 |
SphI
| GCATG|C |
509 |
SspI
| AAT|ATT |
1158 |
StuI
| AGG|CCT |
1056 |
Taqƒ¿I
| T|CGA |
62, 221, 339, 783, 787 |
TfiI
| G|A[AT]TC |
129, 291, 363, 1065, 1113 |
TliI
| C|TCGAG |
340 |
TseI
| G|C[AT]GC |
703 |
Tsp509I
| |AATT |
41, 105, 124, 408, 452, 529, 681, 767 |
TspRI
| NNCA[CG]TGNN| |
199, 656, 765, 1084 |
XcmI
| CCANNNNN|NNNNTGG |
927, 951 |
XhoI
| C|TCGAG |
340 |
Click here to view TAIR data
>AT1G27370.1 length:1191
ATGGACTGCA ACATGGTATC TTCGTTCCCG TGGGACTGGG AGAATTTGAT | 50 |
CATGTCCAAT CAGTCGAAGA CTGAAAATGA AAAAAAACAG CAATCTACTG | 100 |
AGTGGGAATT TGAAAAAGGT GAAGGAATTG AATCTATAGT TCCAGATTTC | 150 |
TTAGGCTTTG AGAAAGTCAG TAGTGGCTCT GCTACTAGTT TCTGGCACAC | 200 |
TGCCGTATCA AAAAGCTCGC AGTCGACCTC TATCAACTCA TCATCTCCCG | 250 |
AGGACAAACG ATGCAATCTT GCATCACAAA GTTCCCCTGG AGATTCTTCC | 300 |
AGCAACATAG ATTTTCTCCA GGTGAAACCA TCCACAGCTC TCGAGGTACC | 350 |
TATTGCCTCA GCTGAATCAG ATCTTTGTTT GAAACTAGGA AAGCGGACAT | 400 |
ACTCTGAAGA ATTTTGGGGT AGGAACAATA ATGACCTTTC AGCGGTTTCT | 450 |
ATGAATTTGT TGACTCCATC TGTTGTTGCT CGGAAGAAAA CCAAATCGTG | 500 |
TGGTCAGAGC ATGCAAGTTC CGCGTTGCCA AATTGATGGC TGTGAGCTGG | 550 |
ATCTCTCATC TTCTAAGGAT TATCATCGCA AGCATAGAGT CTGCGAAACG | 600 |
CATTCAAAGT GCCCAAAAGT TGTTGTGAGT GGCCTGGAAC GTCGTTTCTG | 650 |
CCAACAGTGT AGCAGGTTCC ATGCTGTCTC AGAATTTGAT GAAAAGAAAC | 700 |
GAAGCTGCCG CAAACGTCTT TCTCATCATA ATGCAAGGCG TCGCAAGCCA | 750 |
CAAGGAGTAT TTCCACTGAA TTCAGAGAGG GTGTTCGATC GAAGACAGCA | 800 |
TACAAGTATG TTGTGGAATG GGTTGTCCCT TAACACGAGA TCTGAAGAAA | 850 |
AGTATACATG GGGTACCACT TATGAGACAA AGCCTACACA GATGGAAAGC | 900 |
GGCTTTACTC TGAGCTTCCA GAGAGGTAAT GGCTCTGAGG ACCAACTGTT | 950 |
TACTGGTAGC ACCCTCTCTT TCTCTGCGTT TCAAACATCT GGTGGGTTCT | 1000 |
CAGCAGGGAA ATCCAACATT CAACTTCCAG ACAAAGGTGT GGGAGAATGC | 1050 |
TCAGGAGGCC TCCATGAATC TCATGATTTC TACAGTGCTC TCTCTCTTCT | 1100 |
GTCAACTACT TCGGATTCAC AAGGGATCAA ACACACTCCC GTGGCCGAAC | 1150 |
CACCGCCAAT ATTTGGCACT TTCCCTAGTC ATTTCATCTG A | 1200 |
>AT1G27370.1 longest ORF length:396
MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF | 50 |
LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS | 100 |
SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS | 150 |
MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET | 200 |
HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP | 250 |
QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES | 300 |
GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC | 350 |
SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI | 400 |
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