fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G27370 SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4)

>AT1G27370.1 CDS map

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Uncut enzymes: AatII, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, StyI, SwaI, Tsp45I, Tth111I, XbaI, XmaI, XmnI
Name Recognition sequence Cut positions
Acc65I G|GTACC 345, 862
AccI GT|[AC][TG]AC 222, 852
AccII(FnuDII) CG|CG 519
AciI C|CGC 518, 706, 1151
AluI AG|CT 212, 334, 358, 543, 701, 911
ApoI Pu|AATTPy 42, 106, 409, 453, 682, 768
AvaI C|PyCGPuG 247, 340
AvaII G|G[AT]CC 938
BanI G|GPyPuCC 345, 862
BbvCI CC|TCAGC 357
BclI T|GATCA 47
BfaI C|TAG 183, 383, 1173
BglII A|GATCT 369, 838
BsaBI GATNN|NNATC 572
BsaHI GPu|CGPyC 737
BsaJI C|CNNGG 28, 248, 285, 1139
BsiEI CGPuPy|CG 786
BsiHKAI G[AT]GC[AT]|C 1085
BslI CCNNNNN|NNGG 440, 1032, 1161
BsmI GAATGCN| 1046
BsoBI C|PyCGPuG 247, 340
Bsp1286I G[GAT]GC[CAT]|C 609, 1085
BspHI T|CATGA 1071
BspT107I(HgiCI) G|G[TC][AG]CC 345, 862
BsrI ACTGGN| 35, 952
BssKI |CCNGG 285, 317, 632
BstNI CC|[AT]GG 285, 317, 632
BstUI CG|CG 519
BstXI CCANNNNN|NTGG 534
BstYI Pu|GATCPy 369, 549, 838
BstZ17I GTA|TAC 852
BtgI C|CPuPyGG 28, 1139
Cac8I GCN|NGC 215, 509, 578, 743
DdeI C|TNAG 97, 149, 356, 562, 677, 909, 934, 998, 1049
DpnI GA-CH3|TC 46, 368, 548, 785, 837, 1123
DpnII |GATC 46, 368, 548, 785, 837, 1123
EaeI Py|GGCCPu 1142
EcoRI G|AATTC 768
Fnu4HI GC|NGC 703, 898
HaeIII GG|CC 629, 1055, 1141
HincII GTPy|PuAC 222, 459, 1101
HinfI G|ANTC 129, 291, 363, 461, 586, 1065, 1113
Hpy188I TCN|GA 366, 402, 479, 503, 678, 771, 840, 908, 933, 1110, 1186
Hpy99I CG[AT]CG| 639, 738
HpyCH4III ACN|GT 653, 944, 1081
HpyCH4IV A|CGT 637, 712
HpyCH4V TG|CA 5, 260, 268, 510, 730
KpnI GGTAC|C 345, 862
MboI |GATC 46, 368, 548, 785, 837, 1123
MseI T|TAA 828
MslI CAPyNN|NNPuTG 728, 1138
MspA1I C[AC]G|C[GT]G 359, 440
MwoI GCNNNNN|NNGC 518, 743, 1054
N.BstNBI GAGTCNNNN|N 591
NlaIII CATG| 10, 49, 508, 668, 855, 1061, 1070
NlaIV GGN|NCC 345, 665, 862
NspI PuCATG|Py 509
PaeR7I C|TCGAG 340
PflMI CCANNNN|NTGG 1161
PspGI |CC[AT]GG 285, 317, 632
PvuI CGAT|CG 786
PvuII CAG|CTG 359
RsaI GT|AC 344, 861
SalI G|TCGAC 222
Sau3AI |GATC 46, 368, 548, 785, 837, 1123
Sau96I G|GNCC 938
ScrFI CC|NGG 285, 317, 632
SfcI C|TPuPyAG 134, 1080
SmlI C|TPyPuAG 340
SpeI A|CTAGT 184
SphI GCATG|C 509
SspI AAT|ATT 1158
StuI AGG|CCT 1056
Taqƒ¿I T|CGA 62, 221, 339, 783, 787
TfiI G|A[AT]TC 129, 291, 363, 1065, 1113
TliI C|TCGAG 340
TseI G|C[AT]GC 703
Tsp509I |AATT 41, 105, 124, 408, 452, 529, 681, 767
TspRI NNCA[CG]TGNN| 199, 656, 765, 1084
XcmI CCANNNNN|NNNNTGG 927, 951
XhoI C|TCGAG 340


Click here to view TAIR data

>AT1G27370.1 length:1191
ATGGACTGCA ACATGGTATC TTCGTTCCCG TGGGACTGGG AGAATTTGAT 
50
CATGTCCAAT CAGTCGAAGA CTGAAAATGA AAAAAAACAG CAATCTACTG 
100
AGTGGGAATT TGAAAAAGGT GAAGGAATTG AATCTATAGT TCCAGATTTC 
150
TTAGGCTTTG AGAAAGTCAG TAGTGGCTCT GCTACTAGTT TCTGGCACAC 
200
TGCCGTATCA AAAAGCTCGC AGTCGACCTC TATCAACTCA TCATCTCCCG 
250
AGGACAAACG ATGCAATCTT GCATCACAAA GTTCCCCTGG AGATTCTTCC 
300
AGCAACATAG ATTTTCTCCA GGTGAAACCA TCCACAGCTC TCGAGGTACC 
350
TATTGCCTCA GCTGAATCAG ATCTTTGTTT GAAACTAGGA AAGCGGACAT 
400
ACTCTGAAGA ATTTTGGGGT AGGAACAATA ATGACCTTTC AGCGGTTTCT 
450
ATGAATTTGT TGACTCCATC TGTTGTTGCT CGGAAGAAAA CCAAATCGTG 
500
TGGTCAGAGC ATGCAAGTTC CGCGTTGCCA AATTGATGGC TGTGAGCTGG 
550
ATCTCTCATC TTCTAAGGAT TATCATCGCA AGCATAGAGT CTGCGAAACG 
600
CATTCAAAGT GCCCAAAAGT TGTTGTGAGT GGCCTGGAAC GTCGTTTCTG 
650
CCAACAGTGT AGCAGGTTCC ATGCTGTCTC AGAATTTGAT GAAAAGAAAC 
700
GAAGCTGCCG CAAACGTCTT TCTCATCATA ATGCAAGGCG TCGCAAGCCA 
750
CAAGGAGTAT TTCCACTGAA TTCAGAGAGG GTGTTCGATC GAAGACAGCA 
800
TACAAGTATG TTGTGGAATG GGTTGTCCCT TAACACGAGA TCTGAAGAAA 
850
AGTATACATG GGGTACCACT TATGAGACAA AGCCTACACA GATGGAAAGC 
900
GGCTTTACTC TGAGCTTCCA GAGAGGTAAT GGCTCTGAGG ACCAACTGTT 
950
TACTGGTAGC ACCCTCTCTT TCTCTGCGTT TCAAACATCT GGTGGGTTCT 
1000
CAGCAGGGAA ATCCAACATT CAACTTCCAG ACAAAGGTGT GGGAGAATGC 
1050
TCAGGAGGCC TCCATGAATC TCATGATTTC TACAGTGCTC TCTCTCTTCT 
1100
GTCAACTACT TCGGATTCAC AAGGGATCAA ACACACTCCC GTGGCCGAAC 
1150
CACCGCCAAT ATTTGGCACT TTCCCTAGTC ATTTCATCTG A
1200

>AT1G27370.1 longest ORF length:396
MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF 
50
LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS 
100
SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS 
150
MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET 
200
HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP 
250
QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES 
300
GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC 
350
SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
400