fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G27370 SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4)

>AT1G27370.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SmaI, StyI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 369, 838
EcoRI G|AATTC 768
KpnI GGTAC|C 345, 862
PvuII CAG|CTG 359
SalI G|TCGAC 222
SpeI A|CTAGT 184
XhoI C|TCGAG 340


Click here to view TAIR data

>AT1G27370.2 length:1191
ATGGACTGCA ACATGGTATC TTCGTTCCCG TGGGACTGGG AGAATTTGAT 
50
CATGTCCAAT CAGTCGAAGA CTGAAAATGA AAAAAAACAG CAATCTACTG 
100
AGTGGGAATT TGAAAAAGGT GAAGGAATTG AATCTATAGT TCCAGATTTC 
150
TTAGGCTTTG AGAAAGTCAG TAGTGGCTCT GCTACTAGTT TCTGGCACAC 
200
TGCCGTATCA AAAAGCTCGC AGTCGACCTC TATCAACTCA TCATCTCCCG 
250
AGGACAAACG ATGCAATCTT GCATCACAAA GTTCCCCTGG AGATTCTTCC 
300
AGCAACATAG ATTTTCTCCA GGTGAAACCA TCCACAGCTC TCGAGGTACC 
350
TATTGCCTCA GCTGAATCAG ATCTTTGTTT GAAACTAGGA AAGCGGACAT 
400
ACTCTGAAGA ATTTTGGGGT AGGAACAATA ATGACCTTTC AGCGGTTTCT 
450
ATGAATTTGT TGACTCCATC TGTTGTTGCT CGGAAGAAAA CCAAATCGTG 
500
TGGTCAGAGC ATGCAAGTTC CGCGTTGCCA AATTGATGGC TGTGAGCTGG 
550
ATCTCTCATC TTCTAAGGAT TATCATCGCA AGCATAGAGT CTGCGAAACG 
600
CATTCAAAGT GCCCAAAAGT TGTTGTGAGT GGCCTGGAAC GTCGTTTCTG 
650
CCAACAGTGT AGCAGGTTCC ATGCTGTCTC AGAATTTGAT GAAAAGAAAC 
700
GAAGCTGCCG CAAACGTCTT TCTCATCATA ATGCAAGGCG TCGCAAGCCA 
750
CAAGGAGTAT TTCCACTGAA TTCAGAGAGG GTGTTCGATC GAAGACAGCA 
800
TACAAGTATG TTGTGGAATG GGTTGTCCCT TAACACGAGA TCTGAAGAAA 
850
AGTATACATG GGGTACCACT TATGAGACAA AGCCTACACA GATGGAAAGC 
900
GGCTTTACTC TGAGCTTCCA GAGAGGTAAT GGCTCTGAGG ACCAACTGTT 
950
TACTGGTAGC ACCCTCTCTT TCTCTGCGTT TCAAACATCT GGTGGGTTCT 
1000
CAGCAGGGAA ATCCAACATT CAACTTCCAG ACAAAGGTGT GGGAGAATGC 
1050
TCAGGAGGCC TCCATGAATC TCATGATTTC TACAGTGCTC TCTCTCTTCT 
1100
GTCAACTACT TCGGATTCAC AAGGGATCAA ACACACTCCC GTGGCCGAAC 
1150
CACCGCCAAT ATTTGGCACT TTCCCTAGTC ATTTCATCTG A
1200

>AT1G27370.2 longest ORF length:396
MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF 
50
LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS 
100
SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS 
150
MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET 
200
HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP 
250
QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES 
300
GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC 
350
SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
400